View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_6 (Length: 492)
Name: NF2686_high_6
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 476
Target Start/End: Original strand, 5522610 - 5523073
Alignment:
| Q |
9 |
gagagagatgaagatcatagaaagaaacaaccggagaaagatgaagatcttccattaaaagtactcagtgaaactcaggagaaaccaatgatggagaaag |
108 |
Q |
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| T |
5522610 |
gagaaagatgaagatcatagaaagaaacaaccggagaaagatgaagatcttccattaaaagtactcagtgaaactcaggagaaaccaatgatggagaaag |
5522709 |
T |
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| Q |
109 |
gtatgatttcaatcaccatgctaaaaattgaaaccttgtaatagaaaatgttgataggattaccactcatgaagttctactcagtgaagacaaaccaatt |
208 |
Q |
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| T |
5522710 |
gtatgatttcaatcaccatgctaaaaattgaaaccttgtaatagaaaatgttcataggattacaactcatgaagttctactcagtgaagacaaaccaatt |
5522809 |
T |
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| Q |
209 |
aggaaaggaaaaatgatttcctttaaagcttttgagagtcaccttgatgtggtcgataattttgaactcgtggagaatccgaaagatcaataactttgcg |
308 |
Q |
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| T |
5522810 |
aggaaaggaaaaatgatttcctttaaagcttttgagagtcaccttgatgtggtcgataattttgaactcgtggagaatccgaaagatcaataactttgcg |
5522909 |
T |
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| Q |
309 |
aagaataagctagagatgagctaacacttatatcaaggaaaattcaaagaacgtagaaaatgaaatatcaactcaagaagaaacttcccttcagaaaata |
408 |
Q |
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| T |
5522910 |
aagaataagctagagatgagctaacacttat----aggaaaattcaaagaacgtagaaaatgaaatatcaactcaagaagaaacttcccttcagaaaata |
5523005 |
T |
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| Q |
409 |
tggatctagagctgagattgataagactcaagtgatgtgttatatatgaaataagctagggcattaca |
476 |
Q |
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| T |
5523006 |
tggatctagagctgagattgataagactcaagtgatgtgttatatatgaaataagctagggcattaca |
5523073 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 18834207 - 18834155
Alignment:
| Q |
174 |
ctcatgaagttctactcagtgaagacaaaccaattaggaaaggaaaaatgatt |
226 |
Q |
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| T |
18834207 |
ctcatgaagttctgctcattgaagacaaaccaatcatgaaaggcaagatgatt |
18834155 |
T |
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