View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_8 (Length: 459)
Name: NF2686_high_8
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 226 - 416
Target Start/End: Complemental strand, 52508923 - 52508734
Alignment:
| Q |
226 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtgaacagcagtcatttgcaatttatacgactttgaagagannnnnnnnaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| || |
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| T |
52508923 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtga-caacagtcatttgcaatttatatgactttgaagagattttttttaa |
52508825 |
T |
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| Q |
326 |
tgaatcaaaattatttgtgcgcaatcagcaaaactatatatagactttggtttttgtatcatatgggtccgattcaaattttaagacaacc |
416 |
Q |
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| T |
52508824 |
tgaatcaaaattatttgtgcgcaatcagcaaatctatatatagactttggtttttgaatcatatgggtccaattcaaattttaagacaacc |
52508734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 52510139 - 52510003
Alignment:
| Q |
20 |
tttcgatcatctgcactggagcaccaaaacaagttgcacttgttgcattccctccttgaaacatatcagggaccagtactccaaatactccacaacctca |
119 |
Q |
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| T |
52510139 |
tttcgatcatctgcactggagcaccaaaacaagttgcacttgttgcattccctccttgaaacatatcagggacaagtactccaaatactccacaacctca |
52510040 |
T |
|
| Q |
120 |
taacccatgcttgtttatctctcacggtattcggaaa |
156 |
Q |
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| T |
52510039 |
taacccatgcttgtttatctctcacggtattcggaaa |
52510003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 52509947 - 52509872
Alignment:
| Q |
158 |
atttaccttcatcagggtgtgctctacgtacataaaattgtgataatatgaacttgtatttttacttcttttttat |
233 |
Q |
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| T |
52509947 |
atttaccttcatcagggtgtgctctacgtacataaaattgtgataatatgaacttgtatttttacttcttttttat |
52509872 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 24620716 - 24620852
Alignment:
| Q |
20 |
tttcgatcatctgcactggagcaccaaaacaagttgcacttgttgcattccctccttgaaacatatcagggaccagtactccaaatactccacaacctca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24620716 |
tttcgatcatctgcactggagcaccaaaacaagttgcacttgttgcattccctccttgaaacatatcagggacaagtactccaaatactccacaacctca |
24620815 |
T |
|
| Q |
120 |
taacccatgcttgtttatctctcacggtattcggaaa |
156 |
Q |
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| T |
24620816 |
taacccatgcttgtttatctctcacggtattcggaaa |
24620852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 24621939 - 24622125
Alignment:
| Q |
226 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtgaacagcagtcatttgcaatttatacgactttgaagagannnnnnnn-a |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| | |
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| T |
24621939 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtga-caacagtcatttgcaatttatatgactttgaagagattttttttta |
24622037 |
T |
|
| Q |
325 |
atgaatcaaaattatttgtgcgcaatcagcaaaactatatatagactttggtttttgtatcatatgggtccgattcaaattttaagac |
412 |
Q |
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| T |
24622038 |
atgaatcaaaattatttgtgcgcaatcagcaaatctatatatagactttggtttttgaatcatatgggtccaattcaaattttaagac |
24622125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 24620908 - 24620975
Alignment:
| Q |
158 |
atttaccttcatcagggtgtgctctacgtacataaaattgtgataatatgaacttg-tatttttactt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24620908 |
atttaccttcatcagggtgtgctctacgtacataaaattgtgataatatgaacttgttatttttactt |
24620975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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