View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_low_2 (Length: 604)
Name: NF2686_low_2
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 9 - 587
Target Start/End: Complemental strand, 48543477 - 48542911
Alignment:
| Q |
9 |
acatcatcaccatcagttttcttcaatctcaaagctactcaacaattctcccaccactaccggtgtccatgatcttcttgaatgtccggtttgcaccaat |
108 |
Q |
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| T |
48543477 |
acatcatcaccatcagttttcttcaatctcaaagctactcaacaatgctcccaccactaccagtgtccatgatcttcttgaatgtccggtttgcaccaat |
48543378 |
T |
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| Q |
109 |
tcaatgtaccctccaatccatcaggtttgttatctgaatatcatccatgtatgttgcaagtctatgtttagataattactgctatctttttacggttttc |
208 |
Q |
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| T |
48543377 |
tcaatgtaccctccaatccatcaggtttgttatctgaatatcatccatgtatgttgcaagtctatgtttagataattactgctatctttttacggttttc |
48543278 |
T |
|
| Q |
209 |
gtttctctttttcttggcaaatgttagttgattagtttagtttgttgcagccctcaaaagtagagataatttgttaatggtagggatcaaacctccttct |
308 |
Q |
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| T |
48543277 |
gtttctctttttcttggcaaatgttagt------gattagtttgttgcagccctcaaaagtagagataatttgttaatggtagggatcaaacctccttct |
48543184 |
T |
|
| Q |
309 |
tcagcttcacaacctataccacttgagagatttaaaaagtggtatattttagttctatataacaagttaatcacaattgaaaccaaggagatcataatag |
408 |
Q |
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| T |
48543183 |
tcagcttcacaacctataccacttgagagatttaaaaagtggtatattttagttctatataacaagttaatcacaattgaaaccaaggagatcataatag |
48543084 |
T |
|
| Q |
409 |
aatacaaatgttccattaaaccaaaggacattcttgtccttgtacaagaaatacagtaaaactagaaaaatttgatttatcatgtctacaacatgatgac |
508 |
Q |
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| T |
48543083 |
aatacaaatgttccattaaaccaaaggacattcttgtccttgtacaagaaatacagt-aaactagaaaaatttgattaatcatgtctacaacatgatgac |
48542985 |
T |
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| Q |
509 |
taattcttaaaaattaaatcaaatttgttttgcagtgtcacaatggacataccctttgttcaaattgtaagacaagggt |
587 |
Q |
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| T |
48542984 |
taattcttaa-----aaatcaaatttgttttgcagtgtcacaatggacataccctttgttcaaattgtaagacaagggt |
48542911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 9834165 - 9834231
Alignment:
| Q |
71 |
gtgtccatgatcttcttgaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttg |
137 |
Q |
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| T |
9834165 |
gtgttcatgagcttcttgaatgtcctgtttgtactaattcaatgtaccctccaattcatcaggtttg |
9834231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 9836248 - 9836299
Alignment:
| Q |
536 |
ttttgcagtgtcacaatggacataccctttgttcaaattgtaagacaagggt |
587 |
Q |
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| T |
9836248 |
ttttgcagtgtcacaatgggcataccctatgttcaacttgtaagactagggt |
9836299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 733059 - 733108
Alignment:
| Q |
88 |
gaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttg |
137 |
Q |
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| T |
733059 |
gaatgtcctgtttgtaccaattcaatgtatcctccaattcatcaggtttg |
733108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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