View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2686_low_20 (Length: 322)
Name: NF2686_low_20
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 1316623 - 1316474
Alignment:
| Q |
62 |
ctggattgggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgcccg |
161 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1316623 |
ctggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgcctg |
1316524 |
T |
|
| Q |
162 |
ggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1316523 |
ggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
1316474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 1316434 - 1316331
Alignment:
| Q |
208 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1316434 |
ttaggctctggacaatatgtttatgtaaaattgcatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
1316335 |
T |
|
| Q |
308 |
tcat |
311 |
Q |
| |
|
|||| |
|
|
| T |
1316334 |
tcat |
1316331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 43486753 - 43486621
Alignment:
| Q |
63 |
tggattgggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagt--gccc |
160 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
43486753 |
tggattaggatttggcatataccatgaaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgggacc |
43486654 |
T |
|
| Q |
161 |
gggaggcagggagataatgctggaaaaactagt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43486653 |
aggaggcagggagataatgctggaaaaactagt |
43486621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 43486549 - 43486463
Alignment:
| Q |
208 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43486549 |
ttaggctctggacaatatgtttatgtaaaattgcaatgtttgtttgattttaatgtcaagtcaaatacattaattgcttcaatagtc |
43486463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University