View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_low_22 (Length: 306)
Name: NF2686_low_22
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 35565585 - 35565864
Alignment:
| Q |
17 |
acctacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctccaatcaacttgatcacctgcatacttctttaacc |
116 |
Q |
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| T |
35565585 |
acctacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctccaatcaacttgatcacctgcatacttctttaacc |
35565684 |
T |
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| Q |
117 |
attttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttccttgaccaacatccattattttttgttcctat-- |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35565685 |
attttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttccttgaccaacatccattattttttgttcctataa |
35565784 |
T |
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| Q |
215 |
nnnnnnnnctagtaacattatttgaggaatgaaaaaacctaatctattgnnnnnnnntaccagtgattgaatttgatatt |
294 |
Q |
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| T |
35565785 |
aaaaaaaactagtaacattatttgaggaatgaaaaaacctaatctattgaaaaaaaataccagtgattgaatttgatatt |
35565864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 35578731 - 35578925
Alignment:
| Q |
20 |
tacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctccaatcaacttgatcacctgcatacttctttaaccatt |
119 |
Q |
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| T |
35578731 |
tacctgtccataagctgttctctggaaggtgtaggaggaagggctccattatattttcctctccattcaacttgatcacctgcatacttctttaaccact |
35578830 |
T |
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| Q |
120 |
ttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttccttgaccaacatccattattttttgttcctat |
214 |
Q |
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| T |
35578831 |
ttctaaaaccaatcacaagagcatctgcctttgttggaacaaaacatgccttatgccaattggcttgaccaacatccaatattttcttttcctat |
35578925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 35590794 - 35590988
Alignment:
| Q |
20 |
tacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctccaatcaacttgatcacctgcatacttctttaaccatt |
119 |
Q |
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|||||||||| ||| |||||||| |||||||||||||| || || ||| |||||||||||||||| ||||||| | |||||||||||||||| ||||| | |
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| T |
35590794 |
tacctgtccaaaagttgttctctgggaggtgtaggaggaagggctccattatattttcctctccattcaacttcaccacctgcatacttcttcaaccact |
35590893 |
T |
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| Q |
120 |
ttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttccttgaccaacatccattattttttgttcctat |
214 |
Q |
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| T |
35590894 |
ttctaaaaccaatcacaagagcatctgcctttgttggaacaaaacatgccttatgccaattggcttgaccaacatccattatttttttttcctat |
35590988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 35577454 - 35577631
Alignment:
| Q |
20 |
tacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctccaatcaacttgatcacctgcatacttctttaaccatt |
119 |
Q |
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|||||||||||||| |||||||| ||||||| | |||| || || ||| |||||| |||||||| ||||||| | ||||||||||||||||||| || | |
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| T |
35577454 |
tacctgtccataagttgttctctgggaggtgcaagaggaagggctccatcatatttccctctccattcaacttcaccacctgcatacttctttaagcact |
35577553 |
T |
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| Q |
120 |
ttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttccttgaccaacatccattatttttt |
206 |
Q |
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|||||||||||||||||| | ||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
35577554 |
ttctaaaaccaatcacaa--------gtctttgttggca-aaaacatgccttatgccaattggcttgaccaacatccattatttttt |
35577631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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