View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2686_low_24 (Length: 253)

Name: NF2686_low_24
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2686_low_24
NF2686_low_24
[»] chr7 (14 HSPs)
chr7 (14-180)||(32518210-32518376)
chr7 (190-253)||(10014847-10014910)
chr7 (190-253)||(1838351-1838414)
chr7 (190-253)||(8742499-8742562)
chr7 (191-253)||(42476461-42476523)
chr7 (192-253)||(25614715-25614776)
chr7 (192-250)||(33881599-33881657)
chr7 (188-241)||(42942269-42942322)
chr7 (190-238)||(37385125-37385173)
chr7 (192-239)||(30402087-30402134)
chr7 (192-231)||(43255461-43255500)
chr7 (192-241)||(19113922-19113971)
chr7 (192-253)||(26041426-26041487)
chr7 (192-253)||(27164731-27164792)
[»] chr4 (13 HSPs)
chr4 (190-253)||(32901445-32901508)
chr4 (188-253)||(42177940-42178005)
chr4 (190-253)||(41495129-41495192)
chr4 (190-253)||(55642497-55642560)
chr4 (190-248)||(20632540-20632598)
chr4 (190-253)||(15638246-15638309)
chr4 (190-253)||(36728514-36728577)
chr4 (192-253)||(46282377-46282438)
chr4 (190-253)||(2193701-2193764)
chr4 (190-241)||(18568707-18568758)
chr4 (190-253)||(20056498-20056561)
chr4 (191-241)||(8681069-8681119)
chr4 (192-253)||(33484000-33484061)
[»] chr1 (6 HSPs)
chr1 (190-253)||(42843236-42843299)
chr1 (190-253)||(50797896-50797959)
chr1 (192-253)||(50777317-50777378)
chr1 (190-241)||(46902731-46902782)
chr1 (190-241)||(16480053-16480104)
chr1 (192-250)||(5383878-5383936)
[»] chr8 (13 HSPs)
chr8 (190-253)||(36064146-36064209)
chr8 (188-253)||(30129525-30129590)
chr8 (190-253)||(11139012-11139075)
chr8 (190-253)||(36497777-36497840)
chr8 (190-253)||(2597052-2597115)
chr8 (190-241)||(37343505-37343556)
chr8 (190-253)||(37562033-37562096)
chr8 (192-250)||(11089696-11089754)
chr8 (192-250)||(38504289-38504347)
chr8 (192-250)||(43587760-43587818)
chr8 (192-250)||(43602317-43602375)
chr8 (188-253)||(34765740-34765805)
chr8 (190-253)||(41519974-41520038)
[»] chr5 (8 HSPs)
chr5 (190-253)||(372612-372675)
chr5 (190-253)||(8959276-8959339)
chr5 (192-253)||(3154537-3154598)
chr5 (190-253)||(17489464-17489527)
chr5 (192-250)||(7077233-7077291)
chr5 (190-253)||(14914486-14914548)
chr5 (190-253)||(39788612-39788675)
chr5 (192-253)||(30574271-30574332)
[»] chr2 (10 HSPs)
chr2 (190-253)||(5962754-5962817)
chr2 (188-253)||(12358429-12358494)
chr2 (190-253)||(12192063-12192126)
chr2 (192-250)||(30413626-30413684)
chr2 (190-253)||(38572055-38572118)
chr2 (190-224)||(5954389-5954423)
chr2 (192-222)||(30192245-30192275)
chr2 (192-253)||(10550353-10550414)
chr2 (192-253)||(22353069-22353130)
chr2 (192-241)||(36582384-36582433)
[»] scaffold0522 (1 HSPs)
scaffold0522 (192-253)||(2398-2459)
[»] chr6 (8 HSPs)
chr6 (190-253)||(1803985-1804048)
chr6 (190-253)||(6435152-6435215)
chr6 (190-236)||(24038314-24038360)
chr6 (190-253)||(12441643-12441706)
chr6 (192-250)||(15328608-15328666)
chr6 (192-250)||(15364778-15364836)
chr6 (192-250)||(34413210-34413268)
chr6 (190-246)||(17417126-17417182)
[»] chr3 (9 HSPs)
chr3 (190-253)||(54233393-54233456)
chr3 (190-253)||(1208061-1208124)
chr3 (190-253)||(23906879-23906942)
chr3 (192-250)||(40478181-40478239)
chr3 (190-248)||(51717562-51717620)
chr3 (192-243)||(46626689-46626740)
chr3 (190-241)||(53932283-53932334)
chr3 (192-250)||(41877807-41877865)
chr3 (192-240)||(14992204-14992252)
[»] scaffold0576 (1 HSPs)
scaffold0576 (192-250)||(9549-9607)
[»] scaffold0514 (1 HSPs)
scaffold0514 (192-253)||(1390-1451)
[»] scaffold0121 (1 HSPs)
scaffold0121 (192-253)||(29899-29960)
[»] scaffold0172 (1 HSPs)
scaffold0172 (192-248)||(17096-17152)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 32518210 - 32518376
Alignment:
Q  14 cataggtgtgacccaaattgaaacctgaaatcaaaaggctttctagtggatatgcggctgtcctagtttatactttacagtattagcgacagcttcaaat 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32518210 catagatgtgacccaaattgaaacctgaaatcaaaaggctttctagtggatatgcggctgtcctagtttatactttacagtattagcgacagcttcaaat 32518309  T
Q  114 cattagccccttttatccatttctttccatttactttgattatcaaaataatgatacatttgaaggg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32518310 cattagccccttttatccatttctttccatttactttgattatcaaaataatgatacatttgaaggg 32518376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 10014847 - 10014910
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| |||| ||||||||| |||||||||||    
T  10014847 agtgatatttgtacatccaattgatgacaactttggtgacaattttgtttttctctctttttat 10014910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 1838351 - 1838414
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| ||||| |||||||| |||||| ||||    
T  1838351 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttttctcttcttat 1838414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 8742562 - 8742499
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| ||||| |||||||| |||||| ||||    
T  8742562 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttat 8742499  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 42476461 - 42476523
Alignment:
Q  191 gtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    |||||||||||||||||||||||||| || |||||  ||||| |||||||| |||||||||||    
T  42476461 gtgatatttgtacatccaattgatgacaactttggcgacaaccttgtttttttctctttttat 42476523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 25614715 - 25614776
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||| ||||||||| ||||||||| ||||| |||||||| |||||| ||||    
T  25614715 tgatatttgtacatctaattgatgacaattttggtgacaaccttgtttttctctcttcttat 25614776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 33881599 - 33881657
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    |||||||||||||| || || |||||||||||||| |||||||||||||  ||||||||    
T  33881599 tgatatttgtacattcatttaatgataattttggtgacaactttgttttcctctctttt 33881657  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 42942269 - 42942322
Alignment:
Q  188 gcagtgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    |||||||||||| || ||| ||||||||||||||||||| ||||| ||||||||    
T  42942269 gcagtgatatttatatatctaattgatgataattttggtgacaaccttgttttt 42942322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 37385125 - 37385173
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtt 238  Q
    ||||||||||||||||||||||||||| || |||||| ||||| |||||    
T  37385125 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgtt 37385173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 30402087 - 30402134
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgttt 239  Q
    ||||||||||||||| | || |||||||||||||| ||||||||||||    
T  30402087 tgatatttgtacatctatttcatgataattttggtgacaactttgttt 30402134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 43255461 - 43255500
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaa 231  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  43255461 tgatatttgtacatctaattgatgataattttggtgacaa 43255500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 19113922 - 19113971
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    ||||||||||| | ||| |||||||||||||| ||||||||||| |||||    
T  19113922 tgatatttgtagaaccatttgatgataatttttgtaacaactttattttt 19113971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 26041487 - 26041426
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| || |||| || ||| || |||||||||||||| |||||| ||||    
T  26041487 tgatatttgtacatccattttatgacaactttagtgacaactttgtttttctctcttcttat 26041426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 27164731 - 27164792
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| |  |||| |||||| || |||||||||||||| |||||| ||||    
T  27164731 tgatatttgtacatccattccatgacaattttagtgacaactttgtttttctctcttcttat 27164792  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 32901508 - 32901445
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||||||    
T  32901508 agtgatatttgtacatccaattgatgataattttggtgacaatcttgtttttctctctttttat 32901445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 42177940 - 42178005
Alignment:
Q  188 gcagtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  42177940 gcagtgatatttgtatattcaattgatgataactttggtaacaactttgtttttctctcttcttat 42178005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 41495192 - 41495129
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||| ||||    
T  41495192 agtgatatttgtatatctaattgatgataattttggtgacaactttgtttttctctcttcttat 41495129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 55642497 - 55642560
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    |||||||||||||||||||||| ||||||| |||||| ||||| ||| ||||||||||||||||    
T  55642497 agtgatatttgtacatccaattaatgataactttggtgacaaccttgcttttatctctttttat 55642560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 20632540 - 20632598
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctt 248  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||    
T  20632540 agtgatatttgtacatccaattgatgacaattttggtgacaactttatttttttctctt 20632598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 15638309 - 15638246
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| ||||| |||||||| |||||| ||||    
T  15638309 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttat 15638246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 36728514 - 36728577
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||  ||||||||||||||| || |||||| |||||||||||||| |||||| ||||    
T  36728514 agtgatatttacacatccaattgatgacaactttggtgacaactttgtttttctctcttcttat 36728577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 46282438 - 46282377
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    |||||||||||||  || |||||||||||||| || |||||||| ||||| |||||||||||    
T  46282438 tgatatttgtacactcatttgatgataatttttgtgacaactttatttttctctctttttat 46282377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 2193701 - 2193764
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||| | ||||  |||||||| |||||| ||||    
T  2193701 agtgatatttgtacatccaattgatgacaactttgatgacaatcttgtttttctctcttcttat 2193764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 18568707 - 18568758
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    ||||||||||||||||||||||||||| || |||||| ||||| ||| ||||    
T  18568707 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgctttt 18568758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 20056561 - 20056498
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| ||||  ||| |||| |||||| ||||    
T  20056561 agtgatatttgtacatccaattgatgacaactttggtgacaatcttgcttttctctcttcttat 20056498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 8681119 - 8681069
Alignment:
Q  191 gtgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    |||||||||||||||||||||||||| || |||||| ||||| ||| ||||    
T  8681119 gtgatatttgtacatccaattgatgacaactttggtgacaaccttgctttt 8681069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 33484000 - 33484061
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||| || |||||| ||||| ||  |||| |||||| ||||    
T  33484000 tgatatttgtacatccaattgatgacaactttggtgacaaccttacttttctctcttcttat 33484061  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 42843236 - 42843299
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||    
T  42843236 agtgatatttgtacatccaattgatgataattttggtgacaaccttgtttttctctcttcttat 42843299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 50797959 - 50797896
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| |||||||||||| |||||| ||||  ||||||||||||||||||||    
T  50797959 agtgatatttgtacatctaattgatgataactttggtgacaaacttgtttttatctctttttat 50797896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 50777317 - 50777378
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||| ||||    
T  50777317 tgatatttgtacatccaattgatgacaattttggtgacaaccttgtttttctctcttcttat 50777378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 46902782 - 46902731
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    ||||||||||||||||||||||||||| |||||| || |||||||| |||||    
T  46902782 agtgatatttgtacatccaattgatgacaattttagtgacaacttttttttt 46902731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 16480104 - 16480053
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    |||||||||||||||| |||||| ||| || |||||||||||| ||||||||    
T  16480104 agtgatatttgtacattcaattgttgacaactttggtaacaaccttgttttt 16480053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 5383936 - 5383878
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || || | || |||||| |||||||||||||| ||||||||    
T  5383936 tgatatttgtacatccatttaattacaactttggtgacaactttgtttttctctctttt 5383878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 36064209 - 36064146
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    |||||||||||||||||||||||||||||| |||||| ||||  ||| ||||||||||||||||    
T  36064209 agtgatatttgtacatccaattgatgataactttggtgacaaacttgcttttatctctttttat 36064146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 30129590 - 30129525
Alignment:
Q  188 gcagtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||| |||| |||||| ||||    
T  30129590 gcagtgatatttgtacatccaattgatgacaactttggtgacaactttgcttttctctcttcttat 30129525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 11139075 - 11139012
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| ||||||||| || |||||| |||||||||||||| | |||||||||    
T  11139075 agtgatatttgtacatcaaattgatgacaactttggtgacaactttgtttttctatctttttat 11139012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 36497840 - 36497777
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| ||||||||| || |||| ||||||| |||||||| |||||||||||    
T  36497840 agtgatatttgtacatctaattgatgacaactttgataacaaccttgtttttctctctttttat 36497777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 2597052 - 2597115
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    |||||||||||||||| |||||||||| || |||||| ||||| |||||||| |||||| ||||    
T  2597052 agtgatatttgtacattcaattgatgacaactttggtgacaaccttgtttttctctcttcttat 2597115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 37343556 - 37343505
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||| ||||    
T  37343556 agtgatatttgtacatccaattgatgataactttggtgacaaccttgatttt 37343505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 37562033 - 37562096
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||| | ||||| |||||||| |||||| ||||    
T  37562033 agtgatatttgtacatccaattgatgacaactttgatgacaaccttgtttttctctcttcttat 37562096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 11089754 - 11089696
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| ||||||||| |||||||||||||| ||| ||||    
T  11089754 tgatatttgtacatccatttaatgacaattttggtgacaactttgtttttctctttttt 11089696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 38504347 - 38504289
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || || | ||||||||| |||| ||||||||| ||||||||    
T  38504347 tgatatttgtacatccatttaattacaattttggtgacaattttgtttttctctctttt 38504289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 43587818 - 43587760
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||| ||||| || |||| || |||||| |||||||||||||| ||||||||    
T  43587818 tgatatttgtatatccatttaatgacaactttggtgacaactttgtttttctctctttt 43587760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 43602317 - 43602375
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| || |||||| |||||||||||| | ||||||||    
T  43602317 tgatatttgtacatccatttaatgacaactttggtgacaactttgtttctctctctttt 43602375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 34765740 - 34765805
Alignment:
Q  188 gcagtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||| ||||||||| |||||| || ||||| ||  |||| ||| |||||||    
T  34765740 gcagtgatatttgtacatctaattgatgacaattttagtgacaaccttacttttctctttttttat 34765805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 41520038 - 41519974
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgttttt-atctctttttat 253  Q
    ||||||||||||||||  |||||| |||||||||||| | ||| ||||||||  |||||||||||    
T  41520038 agtgatatttgtacatttaattgacgataattttggtgataaccttgtttttcctctctttttat 41519974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 372612 - 372675
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||| |||| | |||||||||    
T  372612 agtgatatttgtacatccaattgatgataattttggtgacaaccttgcttttctatctttttat 372675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 8959339 - 8959276
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||  ||||| |||||||| |||||||||||    
T  8959339 agtgatatttgtacatccaattgatgacaactttggcgacaaccttgtttttctctctttttat 8959276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 3154537 - 3154598
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||| ||||| |||||||||||    
T  3154537 tgatatttgtacatttaattgatgacaattttggtgacaactttatttttctctctttttat 3154598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 17489527 - 17489464
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| ||||  |||||||| |||||| ||||    
T  17489527 agtgatatttgtacatccaattgatgacaactttggtgacaatcttgtttttctctcttcttat 17489464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 7077233 - 7077291
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| || |||||| |||||||||||||| ||||||||    
T  7077233 tgatatttgtacatccatttaatgacaactttggtgacaactttgtttttctctctttt 7077291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 14914548 - 14914486
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||| || || |||| |||| | ||||||||||||||||||||| ||||    
T  14914548 agtgatatttgtacatccatttcat-ataactttgatgacaactttgtttttatctcttcttat 14914486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 39788612 - 39788675
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||| |||||||||||||| |||||| ||||  ||| |||| |||||| ||||    
T  39788612 agtgatatttgtacaaccaattgatgataactttggtgacaatcttgcttttctctcttcttat 39788675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 30574271 - 30574332
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| |  |||| |||||| || |||||||||||||| |||||| ||||    
T  30574271 tgatatttgtacatccattccatgacaattttagtgacaactttgtttttctctcttcttat 30574332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 5962817 - 5962754
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||||| ||||    
T  5962817 agtgatatttgtacatctaattgatgataattttggtgataactttgtttttctctcttcttat 5962754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 12358494 - 12358429
Alignment:
Q  188 gcagtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||||| || |||||| ||||| ||| |||| | |||||||||    
T  12358494 gcagtgatatttgtacatccaattgatgacaactttggtgacaaccttgcttttctatctttttat 12358429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 12192126 - 12192063
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||| |||| |||||| ||||| ||| |||| ||| |||||||    
T  12192126 agtgatatttgtacatccaattgataataactttggtgacaaccttgcttttctctatttttat 12192063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 30413626 - 30413684
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| ||||||||| ||||||||| |||| ||||||||    
T  30413626 tgatatttgtacatccatttaatgacaattttggtgacaactttgcttttctctctttt 30413684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 38572118 - 38572055
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    |||||||||||||||| |||||||| | || |||||| ||||| |||||||| |||||| ||||    
T  38572118 agtgatatttgtacattcaattgataacaactttggtgacaaccttgtttttctctcttcttat 38572055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 5954389 - 5954423
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttg 224  Q
    ||||||||||||||||||||||||||| |||||||    
T  5954389 agtgatatttgtacatccaattgatgacaattttg 5954423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 30192245 - 30192275
Alignment:
Q  192 tgatatttgtacatccaattgatgataattt 222  Q
    |||||||||||||||||||||||||||||||    
T  30192245 tgatatttgtacatccaattgatgataattt 30192275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 10550353 - 10550414
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||| ||||||| ||||||| || |||| | |||||||||||||| ||| |||||||    
T  10550353 tgatatttggacatccatttgatgacaactttgttgacaactttgtttttctctatttttat 10550414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 22353069 - 22353130
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| || |||||||||||||| | ||| |||| ||| |||||| ||||    
T  22353069 tgatatttgtacatccatttaatgataattttggtgataaccttgtatttctctcttcttat 22353130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 36582433 - 36582384
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    ||||||||||||||||| ||||||| || |||||| ||||| ||||||||    
T  36582433 tgatatttgtacatccatttgatgacaactttggtgacaaccttgttttt 36582384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 2398 - 2459
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||| |||| |||||||||||    
T  2398 tgatatttgtacatccaattgatgataattttggtgacaatcttgattttctctctttttat 2459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 1804048 - 1803985
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| ||||| |||||||| |||||| ||||    
T  1804048 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttat 1803985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 6435215 - 6435152
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    |||| |||||||||||||||||||||| ||||||||| ||||| |||||||| |||||| ||||    
T  6435215 agtggtatttgtacatccaattgatgacaattttggtgacaaccttgtttttctctcttcttat 6435152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 24038360 - 24038314
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttg 236  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||||    
T  24038360 agtgatatttgtacatctaattgatgacaattttggtgacaactttg 24038314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 12441706 - 12441643
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| ||||||||| || |||||| ||||| ||| |||| |||||| ||||    
T  12441706 agtgatatttgtacatctaattgatgacaactttggtgacaaccttgcttttctctcttcttat 12441643  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 15328666 - 15328608
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| || |||||| |||||||||||||  ||||||||    
T  15328666 tgatatttgtacatccatttaatgacaactttggtgacaactttgttttcctctctttt 15328608  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 15364836 - 15364778
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| || |||||| |||||||||||||  ||||||||    
T  15364836 tgatatttgtacatccatttaatgacaactttggtgacaactttgttttcctctctttt 15364778  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 34413268 - 34413210
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||| | || |||| ||||||||| ||||||||| |||| ||||||||    
T  34413268 tgatatttgtacatcaatttaatgacaattttggtgacaactttgattttttctctttt 34413210  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 17417126 - 17417182
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctc 246  Q
    ||||||||||||| ||||||||||||| || |||||| ||||| || ||||| ||||    
T  17417126 agtgatatttgtatatccaattgatgacaactttggtgacaaccttatttttctctc 17417182  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 54233393 - 54233456
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| ||||| |||||||| |||||| ||||    
T  54233393 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttat 54233456  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 1208124 - 1208061
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||  || |||||| ||||||||| |||| |||||| ||||    
T  1208124 agtgatatttgtacatccaattgatgtcaactttggtgacaactttgattttctctcttcttat 1208061  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 23906879 - 23906942
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||||||||||||| || |||||| ||||| ||| |||| |||||| ||||    
T  23906879 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgcttttctctcttcttat 23906942  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 40478181 - 40478239
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| ||||||||| |||||||||||||  ||||||||    
T  40478181 tgatatttgtacatccatttaatgacaattttggtgacaactttgttttcctctctttt 40478239  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 51717620 - 51717562
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctt 248  Q
    ||||||||||||||||||||||||||| || |||||| ||||| ||| |||| ||||||    
T  51717620 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgcttttctctctt 51717562  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 46626740 - 46626689
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttat 243  Q
    ||||||||||||||| ||||||||| || |||||| ||||||||| ||||||    
T  46626740 tgatatttgtacatctaattgatgacaactttggtgacaactttgcttttat 46626689  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 53932283 - 53932334
Alignment:
Q  190 agtgatatttgtacatccaattgatgataattttggtaacaactttgttttt 241  Q
    ||||||||||||||||||||||||||| || |||||| ||||| ||| ||||    
T  53932283 agtgatatttgtacatccaattgatgacaactttggtgacaaccttgctttt 53932334  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 41877865 - 41877807
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| || |||||| |||||||||||||| ||| ||||    
T  41877865 tgatatttgtacatccatttaatgacaactttggtgacaactttgtttttctctttttt 41877807  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 14992252 - 14992204
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttt 240  Q
    ||||||||||||||||| || |||| || |||||| |||||||||||||    
T  14992252 tgatatttgtacatccatttaatgacaactttggtgacaactttgtttt 14992204  T

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Target: scaffold0576 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 9607 - 9549
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttt 250  Q
    ||||||||||||||||| || |||| || |||||| |||||||||||||  ||||||||    
T  9607 tgatatttgtacatccatttaatgacaactttggtgacaactttgttttcctctctttt 9549  T

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Target: scaffold0514 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 1390 - 1451
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| |  |||| |||||| || |||||||||||||| |||||| ||||    
T  1390 tgatatttgtacatccattccatgacaattttagtgacaactttgtttttctctcttcttat 1451  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 29960 - 29899
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctttttat 253  Q
    ||||||||||||||||| || |||| || ||| || ||||| |||||||| |||||||||||    
T  29960 tgatatttgtacatccatttaatgacaactttagttacaaccttgtttttctctctttttat 29899  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 17152 - 17096
Alignment:
Q  192 tgatatttgtacatccaattgatgataattttggtaacaactttgtttttatctctt 248  Q
    ||||||||||||||||| || |||| || |||||| |||||||||||| | ||||||    
T  17152 tgatatttgtacatccatttaatgacaactttggtgacaactttgtttctctctctt 17096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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