View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_low_27 (Length: 248)
Name: NF2686_low_27
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43035288 - 43035520
Alignment:
| Q |
1 |
tcttctatagatagcttattaagtaacaagcatgatattctatagatagcttattataagctttggttgtagaaacaacttacacataagtatagaagtg |
100 |
Q |
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| T |
43035288 |
tcttctatagatagcttattaagtaacaagcatgatattctatagatagcttattataagctttggttgtagaaacaacttacacataagtatagaagtg |
43035387 |
T |
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| Q |
101 |
tttttgagtaagtgttttattaagctatgtatccaaatgcctctcgagtgtaacaacataatgaaattgttaaactgtgacaggagaatcagactcttgt |
200 |
Q |
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| T |
43035388 |
tttttgagtaactgttttattaagctatgtatccaaatgcctctcgagtgtaacaacataatgaaattgttaaactgtgccaggagaatcagactcttgt |
43035487 |
T |
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| Q |
201 |
attttcggtgtgccagagtatcaccaaagttga |
233 |
Q |
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| T |
43035488 |
attttcggtgtgccagagtatcaccaaagttga |
43035520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 43035273 - 43035308
Alignment:
| Q |
21 |
aagtaacaagcatgatattctatagatagcttatta |
56 |
Q |
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| T |
43035273 |
aagtaacaagcatgatcttctatagatagcttatta |
43035308 |
T |
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