View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_low_28 (Length: 237)
Name: NF2686_low_28
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18157685 - 18157465
Alignment:
| Q |
1 |
cctcaaattcctccaaacaaacaacacactcaccaccatcaccttcttcaatctcaatcttctccatagcttctatagactccttcgtagccggtggttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18157685 |
cctcaaattcctccaaacaaacaacacactcaccaccatcaccttcttcaatctcaatcttgtccatagcttctatagactccttcgtagccggtggttg |
18157586 |
T |
|
| Q |
101 |
accattctttgtagaacttccaaggttgttaaagagttcttcaatgcttgaagctccatcgattacagtgatactctgtgtcaaagggttcacaaaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18157585 |
accattctttgtagaacttccaaggttgttaaagagttcttcaatgcttgaagctccatcgattacagtgatactctgtgtcaaagggttcacaaaaatg |
18157486 |
T |
|
| Q |
201 |
attctttgaggagtggaatct |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
18157485 |
attctttgaggagtggaatct |
18157465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 18161399 - 18161195
Alignment:
| Q |
1 |
cctcaaattcctccaaacaaacaacacactcaccaccatcaccttcttcaatctcaatcttctccatagcttctatagactccttcgtagccggtggttg |
100 |
Q |
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||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
18161399 |
cctcaaactcctccaaacaaacaacacactctcctccatcaccttcttcaatctcaatcttctccatagcttctatagactcctttgttgccggtggttg |
18161300 |
T |
|
| Q |
101 |
accattctttgtagaacttccaaggttgttaaagagttcttcaatgcttgaagctccatcgattacagtgatactctgtgtcaaagggttcacaaaaatg |
200 |
Q |
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|||| ||||||| | ||| ||||||||||| || || ||||||| |||||||||||||||||| ||| |||| |||||| || | |||||| || ||| |
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| T |
18161299 |
accagtctttgtggcactcccaaggttgttgaaaagctcttcaaggcttgaagctccatcgatcacaaccataccctgtgtgaatgtgttcaccaagatg |
18161200 |
T |
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| Q |
201 |
attct |
205 |
Q |
| |
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||||| |
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| T |
18161199 |
attct |
18161195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 52896681 - 52896568
Alignment:
| Q |
108 |
tttgtagaacttccaaggttgttaaagagttcttcaatgcttgaagctccatcgattacagtgatactctgtgtcaaagggttcacaaaaatgattcttt |
207 |
Q |
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||||||| ||||||||||||||| |||||||| ||| |||||||||||||| || ||| |||| ||||| |||||| |||| || |||||||||| |
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| T |
52896681 |
tttgtagcacttccaaggttgttgaagagttcgacaagccttgaagctccatcaatcacaaccataccatgtgtgaaaggggtcaccaagatgattcttt |
52896582 |
T |
|
| Q |
208 |
gaggagtggaatct |
221 |
Q |
| |
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|||| ||||||||| |
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| T |
52896581 |
gaggggtggaatct |
52896568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 52896745 - 52896681
Alignment:
| Q |
21 |
acaacacactcaccaccatcaccttcttcaatctcaatcttctccatagcttctatagactcctt |
85 |
Q |
| |
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||||||| ||| || |||||| ||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
52896745 |
acaacaccctctccgccatcatcttcttcaatctcaaccttcttcatatcttctatagactcctt |
52896681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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