View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_low_7 (Length: 480)
Name: NF2686_low_7
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 12060416 - 12060858
Alignment:
| Q |
17 |
acaaagggcaccgacataaccaaaaaccccacagccaaagccccttagggccacccaaaaaacagaagaagnnnnnnnntactcctagcaaaacatttag |
116 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| | |
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| T |
12060416 |
acaaagggcaccgacataaccgaaaaccccacagccgaagccccttagggccacccaaaaaacagaagaagaaaaaaaatagtcctagcaaa-------g |
12060508 |
T |
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| Q |
117 |
gaatcctatcatgtagaagtttccatgagaactccacaactttggttggagccggactcttgcgaatatgcgaaaacaccctcccttgcacatccgttaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12060509 |
gaatcctatcatgtagaagtttccatgagaactcgacaactttggttggagccggactcttgcgaatatgcgaaaacaccctcccttgcaaatccgttaa |
12060608 |
T |
|
| Q |
217 |
agagccctcctcaaagcatcaaccccactaacttcttatacataaattccaacctccactaccaaacatcttcttcatgtgacccctaaatccttccaag |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12060609 |
agagccctcctcaaagcatcaaccccactaaattcttatgcataaattccaacctccactaccaaacatcttcttcatgtgacccctaaatccttccaag |
12060708 |
T |
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| Q |
317 |
tcttccaacaactcccgaagcatattattctcccaaacaaaaagcggacgacaccaagagaataaccaattactctccatcgttctaaaaccccccaaat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12060709 |
tcttccaacaactcccgaagcatattattctcccaaacaaaaaacggacgacaccaagagaataaccaattactctccatcgttctaaaaccccccaaat |
12060808 |
T |
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| Q |
417 |
tacccacatcgacattacttacaagagttagggttcggactttgaattct |
466 |
Q |
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| T |
12060809 |
tacccacatcgacattacttacaagatttagggttcggactttgaattct |
12060858 |
T |
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Back To:
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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 26697557 - 26697619
Alignment:
| Q |
17 |
acaaagggcaccgacataacca-aaaaccccacagccaaagccccttagggccacccaaaaaa |
78 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| |
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| T |
26697557 |
acaaagggcaccgacataaccagaaaaccccacagccaaaacccctttgggccacccaaaaaa |
26697619 |
T |
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