View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_low_9 (Length: 415)
Name: NF2686_low_9
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 43 - 308
Target Start/End: Complemental strand, 21221192 - 21220918
Alignment:
| Q |
43 |
attggttaggaagagaggggcacaattgcaaattattgcacctatctaacgaaattttatgag---------cctttttcaaacggttcaaaatttgcag |
133 |
Q |
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| T |
21221192 |
attggttaggaagagaggggcacaattgtaaattattgcacctatctatcgaaattttatgagactgagatgcctttttcaaacggttcaaaatttgcag |
21221093 |
T |
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| Q |
134 |
gtttaagcctgggtgggacctatgtatgattcttcaccaacggtaacaaacgtttcaaaaatactgaaattttaaatcatgggccccacttgtgactaga |
233 |
Q |
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| T |
21221092 |
gtttaagtctggg----acctatgtatgattcttcaccaacggtaacaaacgtttcaaaaatactgaaattttaaatcatgggccccacttgtgac-aga |
21220998 |
T |
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| Q |
234 |
aagccgatgctcaagctacagtttgtcgtt-----agtgcccacgtttgaaacaagacagcaagtcagccacacattcct |
308 |
Q |
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| T |
21220997 |
aagctgatgctcaagctacagtttgtcgttcaagaagtgcccacatttgaaacaagacaacaagtcagccacacattcct |
21220918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 21216654 - 21216561
Alignment:
| Q |
304 |
ttcctgatagaggtacaacggataatgttattattttgcaagaagttattcaattgatgagtaaatcgaagaagaagaaaaagggagatgtggt |
397 |
Q |
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| T |
21216654 |
ttcctgatagaggtacagcggataatgttattattttgcaagaagttattcaattgatgagtaaatcgaagaagaataaaaagggagatgtggt |
21216561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 44752191 - 44752124
Alignment:
| Q |
158 |
tatgattcttcaccaacggtaacaaacgttt-caaaaatactgaaattttaaatcatgggccccactt |
224 |
Q |
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| T |
44752191 |
tatgattcttcaccaacggtaacaaacatttaaaaaaaaactgaaatttgaaatcatgggccccactt |
44752124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 44752345 - 44752284
Alignment:
| Q |
43 |
attggttaggaagagagg-ggcacaattgcaaattattgcacct-atctaacgaaattttat |
102 |
Q |
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| T |
44752345 |
attggttaggaaggaaggtggcacaattgcaaattattgcacctaatctaacgaaaatttat |
44752284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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