View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_100 (Length: 234)
Name: NF2687_high_100
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_100 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 1746030 - 1745871
Alignment:
| Q |
50 |
gtttgaggttgcatcttagaagacttgaagtcttgttctaatcttaagaattgtgttttaataaaaagaaactgttgttggactatagaagttattttaa |
149 |
Q |
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| T |
1746030 |
gtttgaggttacatcttagaagacttgaagtcttgttctaatcttaagaattgtgttttaataaaaagaaactgttgttggactatagaaattattttaa |
1745931 |
T |
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| Q |
150 |
aatattatatttttactaattgaatcaacgaaaacttaaaattcaccctcaaaattttaa |
209 |
Q |
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| T |
1745930 |
aatattatatttttactaattgaatcaacgaaaacttaaaattcaccctcaaaattttaa |
1745871 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 1745872 - 1745828
Alignment:
| Q |
180 |
aaaacttaaaattcaccctcaaaattttaaggctatgatattgat |
224 |
Q |
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| T |
1745872 |
aaaacttaaaattcaccctcaaaattttaaggctatgatattgat |
1745828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 19906073 - 19906150
Alignment:
| Q |
86 |
tctaatcttaagaattgtgtt-ttaataaaaagaaactgttgttggactatagaagttattttaaaatattatatttt |
162 |
Q |
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| T |
19906073 |
tctattcttaaaaattgggttcttaataaaaagaaaatgttgttggaccttataaattatttcaaaatattatatttt |
19906150 |
T |
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