View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_101 (Length: 228)
Name: NF2687_high_101
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_101 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 34951167 - 34951366
Alignment:
| Q |
12 |
ataattctagttgtatgatataccttgaccaaaacggtatcagcttgagggatagatttaaacatgttcccaccaacaaaactcaagttactgcttcctg |
111 |
Q |
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| T |
34951167 |
ataattctagttgtatgatataccttgagcaaaacggtatcagcttgagggatagatttaaacatgttcccaccaacaaaactcaagttaatgctccctg |
34951266 |
T |
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| Q |
112 |
ttaaacccgaaacaacctgtggaaggtccaagacagtgtacttcaactctggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaac |
211 |
Q |
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| T |
34951267 |
ttaaacccgaaacaacctgtggaaggtccaagacagtgtacttcagctctggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaac |
34951366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 34946713 - 34946895
Alignment:
| Q |
29 |
atataccttgaccaaaacggtatcagcttgagggatagatttaaacatgttcccaccaacaaaactcaagttactgcttcctgttaaacccgaaacaacc |
128 |
Q |
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| T |
34946713 |
atataccttgagcgaaacagcatcagcttgagggatggatttaaacatgttcccaccaacaaaactcaagttattggttcctgttaaacctgaaacaacc |
34946812 |
T |
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| Q |
129 |
tgtggaaggtccaagacagtgtacttcaactctggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaac |
211 |
Q |
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| T |
34946813 |
tgtggaaggtccaggacaatgtacttcagctctggaaacgcctcacatataatcttagctgtgtttccagttccaccaccaac |
34946895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 8074636 - 8074682
Alignment:
| Q |
50 |
atcagcttgagggatagatttaaacatgttcccaccaacaaaactca |
96 |
Q |
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| T |
8074636 |
atcagcttgagggatagattcaaacatgtttccgcctacaaaactca |
8074682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 8074748 - 8074797
Alignment:
| Q |
162 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaac |
211 |
Q |
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| T |
8074748 |
ggaaacgcctcacaaataattttaacagtgtttccggttccacctccaac |
8074797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 34343663 - 34343605
Alignment:
| Q |
153 |
ttcaactctggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaac |
211 |
Q |
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| T |
34343663 |
ttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaac |
34343605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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