View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_13 (Length: 595)
Name: NF2687_high_13
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 48066071 - 48065515
Alignment:
| Q |
1 |
gttattatttgtataataatgtgaatctcattttggtatggatcatgcaattgggaagggggatatataaggtttgatcatttgacactctgaaatgtaa |
100 |
Q |
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| T |
48066071 |
gttattatttgtataataatgtgaatctcattttggtatggatcatgcaattgggaagggggatatataaggtttgatcatttgacactctgaaatgtaa |
48065972 |
T |
|
| Q |
101 |
actcattaatgtcttgtttctaccacctcccaatgatttaaagcaaaccgctcaatcgtcatgaatggtcttaaattagatagaagaagtggaaatatcc |
200 |
Q |
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| T |
48065971 |
actcattaatgtcttgtttctaccacctgccaatgatttaaagcaaaccgctcaatcgtcatggatggtcttaaattagatagaagaagtggaaatatcc |
48065872 |
T |
|
| Q |
201 |
atctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgagtctcagtcagatttattcttcatcataatcacatacaattac |
300 |
Q |
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| T |
48065871 |
atctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgactctcagtcagatttattcttcatcataatcacatacaattac |
48065772 |
T |
|
| Q |
301 |
aaacatggacaaatatttttacttcttgccagtattgcttaactggtagtagtggtatacacctgtaagtgtaacttagtcgacaaattaaattagcacc |
400 |
Q |
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| T |
48065771 |
aaacatggacaaatatttttacttcttgccagtattgcttaactgg---tagtggtatacacctgtaagtgtaacttagtcgacaaattaaattagcacc |
48065675 |
T |
|
| Q |
401 |
ttgccgaaacaagtacaattaggtaggtgttggaacatcaaatatattggacatttcgttttaatgcgtgtttcgttcaacagtcaaattaacaaaatca |
500 |
Q |
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| T |
48065674 |
ttgccgaaacaagtacaattaggtaggtgttggaacatcaaatatattggaca-----------------tttcgttcaacagtcaaattaacaaaatca |
48065592 |
T |
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| Q |
501 |
cggagaatggcaaacgctacactatgcaggttcacaaaatcacgatggttcacgttgattttacaatctcaccaaac |
577 |
Q |
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| T |
48065591 |
cggagaatggcaaacgctacactatgcaggttcacaaaatcatgatggttcacggtgattttacaatctcaccaaac |
48065515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 48083316 - 48083192
Alignment:
| Q |
166 |
tggtcttaaattagata--gaa--gaagtggaaatatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgagtct |
261 |
Q |
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||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48083316 |
tggtcttaaattagatatagaattgaagtgaaaacatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgactct |
48083217 |
T |
|
| Q |
262 |
cagtcagatttattcttcatcataa |
286 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
48083216 |
caatcagatttattcttcatcataa |
48083192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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