View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_16 (Length: 581)
Name: NF2687_high_16
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 10799219 - 10799078
Alignment:
| Q |
5 |
ttgattatgtctctttatttgcatcgacatcaagggaatcatcgatgctgccatttcatcgtcaccataatggatggaggaaggggagactaagggagga |
104 |
Q |
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| T |
10799219 |
ttgattatatctctttatttgcatcgacatcaaaggaatcatcgattctgccatttcatcgtcaccataatggatggaggaaggggagactaagggagga |
10799120 |
T |
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| Q |
105 |
aaataaagcagttttggatctaatttacttctaaagaattgt |
146 |
Q |
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| T |
10799119 |
aaataaagcagttttggatctaatttacttctaaagaattgt |
10799078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 317 - 463
Target Start/End: Complemental strand, 10799084 - 10798943
Alignment:
| Q |
317 |
gaattgtcacttgtaacttcagatctgaattgttt--aaaaaatctccactctgattattttaattgatatggggttttacattgattaaagaagaataa |
414 |
Q |
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| T |
10799084 |
gaattgtcacttgtaacttcagatctgaattgtttttaaaaaatctcaactctgattattttaattgatatggggttttac-------aaagaagaataa |
10798992 |
T |
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| Q |
415 |
gaaagtgagaatttggaatgggttgagttaaaacaagagatcataaagt |
463 |
Q |
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| T |
10798991 |
gaaagtgagaatttggaatgggttgagttaaaacaagagaacataaagt |
10798943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 10808382 - 10808245
Alignment:
| Q |
5 |
ttgattatgtctctttatttgcatcgacatcaagggaatcatcgatgctgccatttcatcgtcaccataatggatggaggaaggggagactaagggagga |
104 |
Q |
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| T |
10808382 |
ttgattatgtctttttctttgcatcgacgttaggggaatcatcgattctgccatttcatcgtcaccataatggatgaaggaaggggagaccaagggagga |
10808283 |
T |
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| Q |
105 |
aaataaagcagttttggatctaatttacttctaaagaa |
142 |
Q |
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| T |
10808282 |
aaataaagcagttttggatctaatttatttctaaagaa |
10808245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 459 - 571
Target Start/End: Complemental strand, 10798990 - 10798878
Alignment:
| Q |
459 |
aaagtgagaatttggaatggtttgagttaaaacaatagaacataaagtttaattannnnnnnnatcaacaagtgtattttattgtttttaatcttgtttg |
558 |
Q |
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| T |
10798990 |
aaagtgagaatttggaatgggttgagttaaaacaagagaacataaagtttaattattttttttatcaacaagtgtattttattgtttttaatcttgtttg |
10798891 |
T |
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| Q |
559 |
atgacatcttcat |
571 |
Q |
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| T |
10798890 |
atgacatcttcat |
10798878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 23881819 - 23881894
Alignment:
| Q |
151 |
tttttgttaaggatagattagggttgcctaatttcaagtttgtgaacttttaagggg-ttttggtttggtctcccc |
225 |
Q |
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| T |
23881819 |
tttttgttaaggatatattagggttacataatttcaagtttgtaacatattaaggggtttttggtttggtcccccc |
23881894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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