View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_17 (Length: 575)
Name: NF2687_high_17
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 296 - 556
Target Start/End: Original strand, 11624964 - 11625219
Alignment:
| Q |
296 |
aagtttcttcatctatggaaggtgtttttgggttctgaataccctccggtaatgttgctgctgaattgttgttgttcttgatctctgcggcatccggtgg |
395 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
11624964 |
aagtttcttcatctatggaaggtgtttttgggtt------accctccggtaatgttgctgctgaattgttgttgttcttgatctctgctgcatctggtgg |
11625057 |
T |
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| Q |
396 |
aggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgacacaagttttcattaaaggttaacgatgaacatgagacac |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11625058 |
aggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgacacaagttttcattaaaggttaacgatgaacatgagacat |
11625157 |
T |
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| Q |
496 |
ggcaccaacactaacatgtcgacaccactaattatttgagacaacataa-tgatttaatgta |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11625158 |
ggcaccaacactaacatgtcgacaccactaattatttgagacaacataagtgatttaatgta |
11625219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 11624679 - 11624891
Alignment:
| Q |
11 |
cagagatggtgatgtggcgataatgtgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttccgcctgcagtcca |
110 |
Q |
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| T |
11624679 |
cagagatggtgatgtggcgataatgcgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttccacctgcagtcca |
11624778 |
T |
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| Q |
111 |
atatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacagg |
210 |
Q |
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| T |
11624779 |
atatctttgacacgccttgcagaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacagg |
11624878 |
T |
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| Q |
211 |
agtaatttgtctg |
223 |
Q |
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||||||||||||| |
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| T |
11624879 |
agtaatttgtctg |
11624891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 31771910 - 31771803
Alignment:
| Q |
79 |
ggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaact |
178 |
Q |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaatt |
31771811 |
T |
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| Q |
179 |
ttgtgtcc |
186 |
Q |
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| T |
31771810 |
tggtgtcc |
31771803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 2823737 - 2823621
Alignment:
| Q |
70 |
gcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagt |
169 |
Q |
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||||| ||||| || |||||||||||||| || |||||||||||||| || || |||||| |||| || || || ||||| ||||||||||| |||| |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacattgtaattattatagt |
2823638 |
T |
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| Q |
170 |
aacagaactttgtgtcc |
186 |
Q |
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| T |
2823637 |
agcagaacttcgtgtcc |
2823621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 18193495 - 18193381
Alignment:
| Q |
92 |
tggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgct |
191 |
Q |
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||||||| || |||||||||||||| ||||| ||||| || | || ||||| ||| |||||||||||||||||||||| || |||||||| |||| |
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| T |
18193495 |
tggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttggcgttgtaattattgtagtaacaaaattttgtgtctacgct |
18193396 |
T |
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| Q |
192 |
gttgcagcgtggaca |
206 |
Q |
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||||| | |||||| |
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| T |
18193395 |
tttgcatcttggaca |
18193381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 18188204 - 18188160
Alignment:
| Q |
142 |
ggctgattgacgttgtaattattgtagtaacagaactttgtgtcc |
186 |
Q |
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||||| ||| |||||||||||||||||||||| || ||||||||| |
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| T |
18188204 |
ggctggttggcgttgtaattattgtagtaacaaaattttgtgtcc |
18188160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 3775700 - 3775596
Alignment:
| Q |
82 |
acatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttg |
181 |
Q |
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||||||||||||| ||| || |||||||| ||||| || || ||||||||||| ||| || || || || ||||| ||||||||||| ||||| || | |
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| T |
3775700 |
acatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttgg |
3775601 |
T |
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| Q |
182 |
tgtcc |
186 |
Q |
| |
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||||| |
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| T |
3775600 |
tgtcc |
3775596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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