View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_high_2 (Length: 873)

Name: NF2687_high_2
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_high_2
NF2687_high_2
[»] chr1 (2 HSPs)
chr1 (18-680)||(36609013-36609677)
chr1 (738-845)||(36608849-36608956)


Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 680
Target Start/End: Complemental strand, 36609677 - 36609013
Alignment:
Q  18 aagaatgatctgaaaatacaaagagaaaatcataacgatggatcattacattacatgtatttaatttgattttgatcttgagaagatgttataggtagga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36609677 aagaatgatctgaaaatacaaagagaaaatcataacgatggatcattacattacatgtatttaatttgattttgatcttgagaagatgttataggtcgga 36609578  T
Q  118 taggaagagatggggagagggtgagggtattaataatatcctcagccccaaagatnnnnnnnnnnnnnn----ggttatatatatggttatggtaattgt 213  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||    
T  36609577 taggaagagatgggaagagggtgagggtattaataatatcctcagccccaaagatagatagagagagagagagggttatatatatggttatggtaattgt 36609478  T
Q  214 caataatataataatgaaaatggtgaaaacatatgaagagagttaaaagagggtgataattatgagnnnnnnnnnnnncaattggaatgaatagaagtat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||            |||||||||||| |||||||||    
T  36609477 caataatataataatgaaaatggtgaaaacatatgaagagagttaaaagaggatgataattatgagaaaaacaaaaaacaattggaatgattagaagtat 36609378  T
Q  314 gaggtgtagtgatggagcaaagttagcaattaggaaacgttgccgggtccaactgagatggcctatgaatcctcctaaaatggcacattgccatttttct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36609377 gaggtgtagtgatggagcaaagttagcaattaggaaacgttgccgggtccaactgagatggcctatgaatcctcctaaaatggcacattgccatttttct 36609278  T
Q  414 tccacannnnnnnnaaagattatcctcatcctcactttcttttattggttactactcccagttggcttgtcttagattaaagggtatgtgtgcatgcaat 513  Q
    ||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||  |  |     
T  36609277 tccacattttttttaaagattatcctcatcctcactttcttttattggtt-ctactcccagttggcttgtcttcgattaaagggtgtgtgtgcgagggac 36609179  T
Q  514 aaggtatatgtttatatgctgtaaatcatctaaaccgttaatctgagatcacaaaattaattttaaacgatcttgatcacaagatcaaaaaggtcgaacg 613  Q
    || ||| ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36609178 aaagtacatgtttatacgttctaaatcatctaaaccgttaatttgagatcacaaaattaattttaaacgatcttgatcaca-gatcaaaaaggtcgaacg 36609080  T
Q  614 tggtaattagagatgtgtttagataaacttttcaattagacctatttatagattgatcagtggtgtg 680  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36609079 tggtaattagagatgtgtttggataaacttttcaattagacctatttatagattgatcagtggtgtg 36609013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 738 - 845
Target Start/End: Complemental strand, 36608956 - 36608849
Alignment:
Q  738 ggccaatttctcaaaaatatctactatttgcttcatttccaaagagatatcatnnnnnnntagaaatttgaatactttggatttttaatcatcttcatct 837  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||    
T  36608956 ggccaatttctcaaaaatatctactatttgcttcatttccaaagagatatcataaaaaaatagaaatttgaatactttgtatttttaatcatcttcatct 36608857  T
Q  838 cttccttc 845  Q
    ||||||||    
T  36608856 cttccttc 36608849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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