View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_21 (Length: 552)
Name: NF2687_high_21
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 67 - 534
Target Start/End: Complemental strand, 50631419 - 50630951
Alignment:
| Q |
67 |
gatccagtcaataatggaaaattaaaaatgaaatagtcttaaagaagttttttggaactcacattgtcgagattttcaaactattataggtatgtgagac |
166 |
Q |
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| T |
50631419 |
gatccagtcaataatggaaaattaaaaatgaaatagtcttaaagaagttttttggaactcacattgtcgagattttcaaactattatatgtatgtgagac |
50631320 |
T |
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| Q |
167 |
ccccaaatgtcattagctagtttttggaagtgatgccaagctcgtctaatgtggtagcaaaactaggttaaggatgacaatagggaattagacccaggag |
266 |
Q |
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| T |
50631319 |
ccccaaatgtcattagctagtttttggaagtgatgccaagctcgtctaatgtggtagcaaaactaggttaaggatgacaatagggaattagacccaggaa |
50631220 |
T |
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| Q |
267 |
cttagataagtgtgagctcgggtattaaagttggagttccacattggcaaggttctcaaattgttggatgaatatatgtgtgtggggcattatcatctaa |
366 |
Q |
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| T |
50631219 |
cttggataagtgtgagctcgggtattaaagttggagttccacattggcaaggttctcaaattattggatgaatatgtgtgt---gggcatcatcatctaa |
50631123 |
T |
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| Q |
367 |
tgagctaacttttaagagcgatattcatttagttggagtatttatttaacatgcacttccttcaagatattacttgttgttaagtagtacatcattgggg |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50631122 |
tgagctaacttttaagagcgatattcatttagttggagtatttaattaacatgcacttccttcaagatattacttgttgttaagtagtacatcattgggg |
50631023 |
T |
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| Q |
467 |
caaatgtaacaatcaaatttgaagagttttacaaataa----taggtgagcgtttggtagtagtgaaagttg |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50631022 |
caaatgtaacaatcaaatttgaagagttttacaaataataggtaggtgagcgtttggtagtagtgaaagttg |
50630951 |
T |
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