View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_high_27 (Length: 484)
Name: NF2687_high_27
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 181 - 408
Target Start/End: Original strand, 52513106 - 52513332
Alignment:
| Q |
181 |
ttggtcttggagatgatggagatttgtagattccataatgataaaaatttataattgcatatactaattaagttgttaattaaaaggaaaaatgaagagg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52513106 |
ttggtcttggagatgatggagatttgtagattccataatgataaaa-tttataattgcatatactaattaagttgttaattaaaaggaaaaatgaagagg |
52513204 |
T |
|
| Q |
281 |
atcaagctaaaggtgttggttgaaaatcccaagatgagtattagctagcaataaggtatagaagtgaatggaatctctagtacagtattgaaaggaacac |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52513205 |
atcaagctaaaggtgttggttgaaaatcccaagatgagtattagctagcaataaggtatagaagtgaatggaatctctagtacagtattgaaaggaacac |
52513304 |
T |
|
| Q |
381 |
agttccaggtgacacccacatacctcgg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
52513305 |
agttccaggtgacacccacatacctcgg |
52513332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 52512939 - 52513087
Alignment:
| Q |
8 |
tgagaagaaatgaaaaaattagcttcatgcatatatataggaaataattaaaactaagaagtgacttacaaagtgatgtttggggtccaagagtgggtgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512939 |
tgagaagaaatgaaaaaattagcttcatgcatatatataggaaataattaaaactaagaagtgacttacaaagtgatgtttggggtccaagagtgggtgg |
52513038 |
T |
|
| Q |
108 |
tggttcctccaacaactctataggatgtggtactggataaagaagaaac |
156 |
Q |
| |
|
|||| ||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
52513039 |
tggtggttcctccaactgtataggatggggtactggataaagaagaaac |
52513087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University