View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_31 (Length: 436)
Name: NF2687_high_31
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 55303392 - 55303807
Alignment:
| Q |
1 |
aaagaatgtgattgttgagttattcaaggaaacatatggtaaggtgatcaatagttcactgccttgtagcccagaaaactgtcaaggtacgcacgcactc |
100 |
Q |
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| T |
55303392 |
aaagaatgtgattgttgagttattcaaggaaacatatggtaaggtgatcaatagttcactgccttgtagcccagaaaactgtcaaggtacgcacgcactc |
55303491 |
T |
|
| Q |
101 |
taatgctaaagccaatattgttgttttgtatggaccaatcaagtaattaatatgtttaactgtttattatatatctcaacaaacaaacnnnnnnngcaat |
200 |
Q |
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| T |
55303492 |
taatgctaaagccaatattgttgttttgtatggaccaatcaagtaattaatatgtttaactgtttattatatatctcaacaaacaaacaaaaaaagcaat |
55303591 |
T |
|
| Q |
201 |
aattttgtatgaggcggagaagctatcgttagaatcggtgttgtatataaagtggctggtagaaaagtataaagggtgtaataagctgttcttttgttgc |
300 |
Q |
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| T |
55303592 |
aattttgtatgaggcggagaagctatcgttagaatcggtgttgtatataaagtggctggtagaaaagtataaagggtgtaataagctgttcttttgttgc |
55303691 |
T |
|
| Q |
301 |
tctgatgaatcaaggctacaaccaatccaatcatattgcaccacggtccgcctctcatcaccatcaacccaacaggtcactcagcatttgctattactta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55303692 |
tctgatgaatcaaggctacaaccaatccaatcatattgcaccacggtccgcctctcatcaccatcaacccaacaggtcactcagcatttgctattactta |
55303791 |
T |
|
| Q |
401 |
cctttcctctaatcat |
416 |
Q |
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|||||||||||||||| |
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| T |
55303792 |
cctttcctctaatcat |
55303807 |
T |
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