View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_36 (Length: 418)
Name: NF2687_high_36
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 38998780 - 38998390
Alignment:
| Q |
17 |
acacaggagtgaattctagtgaaatagaaatgacattttttgcaccatgaaaaggctttgtagtgttgaaggataaatacggaggaagactcaactatcc |
116 |
Q |
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| T |
38998780 |
acacaggagtgaattctagtgaaatagaaatgacattttttgcaccatgaaaaggctttgtagtgttgaaggataaatacggaggaagactcaactatcc |
38998681 |
T |
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| Q |
117 |
ctctattcatcatgttttaatttcttatgtcatgaccataacgtcaatagattcatttactgatatttgttgatctgacaatgcattatatcatgataat |
216 |
Q |
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| T |
38998680 |
ctctattcatcatgttttaatttcttatgtcatgaccataacgtcaatagattcatttactgatatttgttgatctgacaatgcattatatcatgataat |
38998581 |
T |
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| Q |
217 |
ctgttgttggttagttacagagtttgttaccttacgttactcttgcagccgctgatatagcttatactatgttgttcatcacagtgagtaaccaatcaaa |
316 |
Q |
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| T |
38998580 |
ctgttgttggttagttacagagtttgttaccttacgttactcttgcagccgctgatatagcttatactatgttgttcatcacagtgagtaaccaatcaaa |
38998481 |
T |
|
| Q |
317 |
gacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttt |
407 |
Q |
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| T |
38998480 |
gacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttt |
38998390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 405
Target Start/End: Original strand, 41048929 - 41049029
Alignment:
| Q |
305 |
taaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattccccc |
404 |
Q |
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| T |
41048929 |
taaccaatcaaggacaccaaatgacgatgacggaactgagacaacatttcaatttcagttctaaattcagcaatcccttgctgggaccgcggattccccc |
41049028 |
T |
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| Q |
405 |
t |
405 |
Q |
| |
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| |
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| T |
41049029 |
t |
41049029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 41041463 - 41041537
Alignment:
| Q |
312 |
tcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgca |
386 |
Q |
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| T |
41041463 |
tcaaagacacctgatgccgatggtggaactgagacaacatttcaatttcaactcgaaattcagcaatcccctgca |
41041537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 41046886 - 41046941
Alignment:
| Q |
148 |
atgaccataacgtcaatagattcatttactgatatttgttgatctgacaatgcatt |
203 |
Q |
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| T |
41046886 |
atgacaataatgtcaatagattcatttcctgatatttgttgatctgactatgcatt |
41046941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 22901739 - 22901772
Alignment:
| Q |
329 |
cgatgacggaactgagacaacatttcaatttcag |
362 |
Q |
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| T |
22901739 |
cgatgacggaactgagacaacatttcaatttcag |
22901772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 22953407 - 22953440
Alignment:
| Q |
329 |
cgatgacggaactgagacaacatttcaatttcag |
362 |
Q |
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| T |
22953407 |
cgatgacggaactgagacaacatttcaatttcag |
22953440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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