View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_37 (Length: 415)
Name: NF2687_high_37
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 259 - 398
Target Start/End: Original strand, 10261447 - 10261586
Alignment:
| Q |
259 |
ttgggttgggaatttgaaggataccaatgaagcgatttttgcaaagaccatgactttaagcgatttagagaaaacccagatggaaaattggggttttggt |
358 |
Q |
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| T |
10261447 |
ttgggttgggaatttgaaggataccaatgaagcgatttttgcaaagaccatgactttaagcgatttagagaaaacccagatggaaaattggggttttggt |
10261546 |
T |
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| Q |
359 |
taagtggttgaagaaaaaatggcatttcgtgtgatgaatc |
398 |
Q |
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| T |
10261547 |
taagtggttgaagaaaaaatggcatttcgtgtgatgaatc |
10261586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 10261290 - 10261382
Alignment:
| Q |
102 |
ttacaagcctgaaagctttgatgcatttcttcctagaagaacttggtgttgttactgttgtaactgtttcaagaggttgtttcaaatgggtat |
194 |
Q |
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| T |
10261290 |
ttacaagcctgaaagctttgatgcatttcttcctagaagaacttggtgctgttattgttgtaactgtttcaagaggttgtttcaaatgggtat |
10261382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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