View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_high_43 (Length: 374)

Name: NF2687_high_43
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_high_43
NF2687_high_43
[»] chr2 (5 HSPs)
chr2 (13-142)||(1344540-1344662)
chr2 (298-364)||(1344821-1344887)
chr2 (10-84)||(39266122-39266197)
chr2 (18-58)||(15262921-15262961)
chr2 (10-58)||(33912278-33912326)
[»] chr4 (3 HSPs)
chr4 (10-134)||(35781825-35781950)
chr4 (298-362)||(35781590-35781654)
chr4 (10-58)||(14135769-14135817)
[»] chr6 (2 HSPs)
chr6 (10-84)||(10099122-10099197)
chr6 (298-334)||(4890211-4890247)
[»] chr5 (2 HSPs)
chr5 (10-90)||(41842421-41842501)
chr5 (298-364)||(41842132-41842198)
[»] chr8 (1 HSPs)
chr8 (18-90)||(23585371-23585444)
[»] chr3 (1 HSPs)
chr3 (10-90)||(9260721-9260802)
[»] chr1 (2 HSPs)
chr1 (10-90)||(30951419-30951500)
chr1 (30-66)||(12469910-12469946)
[»] scaffold0667 (1 HSPs)
scaffold0667 (18-84)||(627-694)
[»] chr7 (1 HSPs)
chr7 (10-52)||(33819812-33819854)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 1344540 - 1344662
Alignment:
Q  13 attctttttacttatcatatcctatcactcctttgtattttctatctaagtttagattggattaaaattaacttatcctgtttaaaaaatgaatattctt 112  Q
    |||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||     |||||||||||||||||| |||||    
T  1344540 attccttttacctatcctatcctatcacgcctttgtattttctatctaagtttagattgggttaaaattaa-----cctgtttaaaaaatgaatcttctt 1344634  T
Q  113 cttgcgcctctcgtatcatctcaaatgaat 142  Q
    ||||||||||||  ||||||||||||||||    
T  1344635 cttgcgcctctc--atcatctcaaatgaat 1344662  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 1344821 - 1344887
Alignment:
Q  298 cgatttccaaatgatctaattcttttcattatcattactgtatcgataatcattcagttcctattcc 364  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1344821 cgatttcaaaatgatctaattctttttattatcattactgtatcgataatcattcagttcctattcc 1344887  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 39266122 - 39266197
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattttctat-ctaagtttagattggattaaaattaac 84  Q
    ||||||| ||||||||||| |||| ||||||||||||| ||||||||| |||||||||   ||| |||||||||||    
T  39266122 attattccttttacttatcttatcttatcactcctttgcattttctatcctaagtttaagctgggttaaaattaac 39266197  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 15262961 - 15262921
Alignment:
Q  18 ttttacttatcatatcctatcactcctttgtattttctatc 58  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  15262961 ttttacctattatatcctatcactcctttgtattttctatc 15262921  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 33912326 - 33912278
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattttctatc 58  Q
    ||||||| ||||| ||||| ||||| ||||||||||| |||||||||||    
T  33912326 attattccttttatttatcttatccaatcactcctttctattttctatc 33912278  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 35781950 - 35781825
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattttctat-ctaagtttagattggattaaaattaacttatcctgtttaaaaaatgaatat 108  Q
    ||||||| ||||||||||  |||| ||||||||||||||||||||||| |||| ||||| |||| ||||||||||| |||||  | |  ||||||||| |    
T  35781950 attattcattttacttattttatcttatcactcctttgtattttctatcctaaatttaggttgggttaaaattaacctatccgatatgcaaaatgaatct 35781851  T
Q  109 tcttcttgcgcctctcgtatcatctc 134  Q
    ||||  ||||||||||||||||||||    
T  35781850 tcttggtgcgcctctcgtatcatctc 35781825  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 35781654 - 35781590
Alignment:
Q  298 cgatttccaaatgatctaattcttttcattatcattactgtatcgataatcattcagttcctatt 362  Q
    ||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  35781654 cgatttcaaaatgaactaattcttttcattatcattatcgtatcgataatcattcagttcctatt 35781590  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 14135817 - 14135769
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattttctatc 58  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  14135817 attattcctttaacttatcatatcctatcactcctttgtattttctatc 14135769  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 10099122 - 10099197
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattttctat-ctaagtttagattggattaaaattaac 84  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  10099122 attattccatttacttatcatatcttatcactcctttgtattttctatcctaagtttaaactggattaaaattaac 10099197  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 4890247 - 4890211
Alignment:
Q  298 cgatttccaaatgatctaattcttttcattatcatta 334  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  4890247 cgatttcaaaatgatccaattcttttcattatcatta 4890211  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 41842501 - 41842421
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattttctatctaagtttagattggattaaaattaacttatcc 90  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||| |  ||||||||||| ||| |||||    
T  41842501 attattccttttacttatactatcctatcactcctttgtattttctatctaaattttggctggattaaaatcaacctatcc 41842421  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 41842198 - 41842132
Alignment:
Q  298 cgatttccaaatgatctaattcttttcattatcattactgtatcgataatcattcagttcctattcc 364  Q
    ||||||| |||||||| | ||||||||||||||||||   ||||||||||||||| |||||||||||    
T  41842198 cgatttcaaaatgatccagttcttttcattatcattatcatatcgataatcattctgttcctattcc 41842132  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 23585371 - 23585444
Alignment:
Q  18 ttttacttatcatatcctatcactcctttgtattttctat-ctaagtttagattggattaaaattaacttatcc 90  Q
    ||||||||||| |||||||||||||  ||||||||||||| |||||||||| |||| ||||||||||| |||||    
T  23585371 ttttacttatcctatcctatcactcagttgtattttctatcctaagtttaggttgggttaaaattaacctatcc 23585444  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 9260802 - 9260721
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattttctat-ctaagtttagattggattaaaattaacttatcc 90  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||||||  ||  ||||||||||| |||||    
T  9260802 attattcattttacttatcatatcctatcacttttttgtattttctatcctaagtttaggctgtgttaaaattaacatatcc 9260721  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 30951419 - 30951500
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattttctat-ctaagtttagattggattaaaattaacttatcc 90  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||||||  || | ||||||||||| |||||    
T  30951419 attattccttttacttatcatatgctatcgctcctttgtattttctatcctaagtttaagttaggttaaaattaacctatcc 30951500  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 12469910 - 12469946
Alignment:
Q  30 tatcctatcactcctttgtattttctatctaagttta 66  Q
    |||||||||||||||||||| ||||||||||||||||    
T  12469910 tatcctatcactcctttgtaatttctatctaagttta 12469946  T

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Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 694 - 627
Alignment:
Q  18 ttttacttatcatatcctatcactcctttgtattttcta-tctaagtttagattggattaaaattaac 84  Q
    ||||||||||  |||| |||||||||||||||||||||| |||||||||||  ||| |||||||||||    
T  694 ttttacttattctatcatatcactcctttgtattttctattctaagtttaggctgggttaaaattaac 627  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 33819854 - 33819812
Alignment:
Q  10 attattctttttacttatcatatcctatcactcctttgtattt 52  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  33819854 attattcctttaacttatcatatcctatcactcctttgtattt 33819812  T

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