View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_47 (Length: 349)
Name: NF2687_high_47
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_47 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 40555951 - 40555620
Alignment:
| Q |
18 |
agggtcttcttctcccctaagcccacgaccgtctcaattcatgacacaccccaattccaacgttaaaaatgtgaccaacaaatttagttcacgtttgcat |
117 |
Q |
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| T |
40555951 |
agggtcttcttctcccctaagcccacgaccgtctcaattcatgacacaccccaattccaacgttaaaaatgtgaccaacaaatttagttcacgtttgcat |
40555852 |
T |
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| Q |
118 |
atggcaactggaaatttaagaacattgtagaccacgatgcccttaaatttagggtccacaaagccctaaaatgaacacgaatttaaaaatctagttcgaa |
217 |
Q |
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| T |
40555851 |
atggcaactggaaatttaagaacattgtagaccacgatgcccttaaatttagggtccacaaagccctacaatgaacacgaatttaaaaatctagttcgaa |
40555752 |
T |
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| Q |
218 |
tttccacagctggaaatttaagggcgttgtccacaatgctctaaaatgaccacaaatttaagggcattgtggaccctttaaaaatctaattacaccttaa |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
40555751 |
tttccacagctggaaatttaagggcattgtccacaatgctctaaaatgaccacaaatttaagggcattgtggaccctttaaaaatctagttacaccctaa |
40555652 |
T |
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| Q |
318 |
aatgaccacaaatttaaggtgtaactagattt |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40555651 |
aatgaccacaaatttaaggtgtaactagattt |
40555620 |
T |
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