View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_49 (Length: 345)
Name: NF2687_high_49
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 42 - 327
Target Start/End: Complemental strand, 28391859 - 28391574
Alignment:
| Q |
42 |
gcaggtatctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacctgtgtttctatctttcatt |
141 |
Q |
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| T |
28391859 |
gcaggtatctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacctgtgtttctatctttcatt |
28391760 |
T |
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| Q |
142 |
gctggcatgtttctttgtcttgtatcagatattgccatgtacttgaacctgttccattcatttcccattaatttccacaaaatttattctggacaattta |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28391759 |
gctggcatgtttctttgtcttgtatcagatattgccatgtacttgaacctgttccattcatttcccattaatttccacaaaatttattctggacaattta |
28391660 |
T |
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| Q |
242 |
gttactattttagtctataattagatacctgtctttatcgagtttgaaaacaaatctaatttgatcaacctcaattcctggcattc |
327 |
Q |
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| T |
28391659 |
attactattttagtctataattagatacctgtctttatcgagtttgaaaacaaatctaatttgatcaacctcaattcctggcattc |
28391574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 28384513 - 28384351
Alignment:
| Q |
50 |
ctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacctgtgtttctatctttcattgctggcat |
149 |
Q |
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|||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| |
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| T |
28384513 |
ctacctctcctctaaattgtggattaattggttttgttaatagaactgcttctttgtaagcaagtacttgacctgtgtctctatctctcattgttggcat |
28384414 |
T |
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| Q |
150 |
gtttctttgtcttgtatcagatattgccatgtacttgaacctgttccattcatttcccattaa |
212 |
Q |
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| T |
28384413 |
gcttctttgccttgtattagataatgccatgtacttgaacctgtgccattgatttctcattaa |
28384351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 28411181 - 28411335
Alignment:
| Q |
50 |
ctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacctgtgtttctatctttcattgctggcat |
149 |
Q |
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||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||| || |||| |||||| |||||| |
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| T |
28411181 |
ctacctctcctgtaaattgtgggttatgtggtttggttaatagaactgcttcagggtaagctaaaacttgacctgttttaacatctctcattgttggcat |
28411280 |
T |
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| Q |
150 |
gtttctttgtcttgtatcagatattgccatgtacttgaacctgttccattcattt |
204 |
Q |
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| T |
28411281 |
ccttctttgccttgtatccgatagagccatgtagttgaacctgtgccattgattt |
28411335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 28411565 - 28411625
Alignment:
| Q |
267 |
tacctgtctttatcgagtttgaaaacaaatctaatttgatcaacctcaattcctggcattc |
327 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||| || | ||||||||| |
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| T |
28411565 |
tacctgtctttattgagtctgaaaacaaatctaatttgatcaaccttaactgctggcattc |
28411625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 28383493 - 28383447
Alignment:
| Q |
281 |
gagtttgaaaacaaatctaatttgatcaacctcaattcctggcattc |
327 |
Q |
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||||||||||||| ||||||||||||||||||||| | ||||||||| |
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| T |
28383493 |
gagtttgaaaacatatctaatttgatcaacctcaactgctggcattc |
28383447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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