View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_50 (Length: 345)
Name: NF2687_high_50
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 331
Target Start/End: Complemental strand, 18100196 - 18099868
Alignment:
| Q |
3 |
gagaaagaaaaatgtacaaccgggattgtcaattgatggcactaacatggctattagggaagaacaagacattgtatataccaacagtatcagcagtgtt |
102 |
Q |
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| T |
18100196 |
gagaaagaaaaatgtacaaccgggattgtcaattgatggcattaacatggctgttagggaagaacaagacattgtatataccaacagtatcagcagtgtt |
18100097 |
T |
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| Q |
103 |
acgtgcagtaatgtacagtgctcatccacacgatataaagtgtagtccagaccaagagaacatgcccttagccgttgattccatgcaatttgatcacaca |
202 |
Q |
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| T |
18100096 |
acgtgcagtaatgtacagtgctcatccacatgatataaagtgtagtccagaccaagagaacatgcccttagccgttgattccatgcaatttgatcacaca |
18099997 |
T |
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| Q |
203 |
agtagtagtgaggcaccatctttacccttgattaaattcttttggagtatgattgttattatgattgggacccaaactgtctgaagtgtctactacatgg |
302 |
Q |
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| T |
18099996 |
agtagtagtgaggcaccatcttcaccgttgattaaattcttttggagtatgattgttattatgattgggacccaaactgtctgaagtgtctactacatgg |
18099897 |
T |
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| Q |
303 |
gttgtttgtgtcagtcacgtgaaactatt |
331 |
Q |
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| T |
18099896 |
gttgtttgtgtcagtcacgtgaaactatt |
18099868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 331
Target Start/End: Complemental strand, 37857804 - 37857476
Alignment:
| Q |
3 |
gagaaagaaaaatgtacaaccgggattgtcaattgatggcactaacatggctattagggaagaacaagacattgtatataccaacagtatcagcagtgtt |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37857804 |
gagaaagaaaaatgtacaaccgggattgtcaattgatggcattaacatggctgttagggaagaacaagacattgtatataccaacagtatcagcagtgtt |
37857705 |
T |
|
| Q |
103 |
acgtgcagtaatgtacagtgctcatccacacgatataaagtgtagtccagaccaagagaacatgcccttagccgttgattccatgcaatttgatcacaca |
202 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37857704 |
acgtgcagtaatgtacagtgctcatccacatgatataaagtgtagtccagaccaagagaacatgcccttagccgttgattccatgcaatttgatcacaca |
37857605 |
T |
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| Q |
203 |
agtagtagtgaggcaccatctttacccttgattaaattcttttggagtatgattgttattatgattgggacccaaactgtctgaagtgtctactacatgg |
302 |
Q |
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| T |
37857604 |
agtagtagtgaggcaccatcttcaccgttgattaaattcttttggagtatgattgttattatgattgggacccaaactgtctgaagtgtctactacatgg |
37857505 |
T |
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| Q |
303 |
gttgtttgtgtcagtcacgtgaaactatt |
331 |
Q |
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| T |
37857504 |
gttgtttgtgtcagtcacgtgaaactatt |
37857476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 21101114 - 21101023
Alignment:
| Q |
92 |
tcagcagtgttacgtgcagtaatgtacagtgctcatccacacgatataaagtgtagtccagaccaagagaacatgcccttagccgttgattc |
183 |
Q |
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|||||||| ||||||||| | ||||| ||||| || ||||| || |||||||||||| || ||||| |||||||| |||||||||||||| |
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| T |
21101114 |
tcagcagttttacgtgcaatgatgtatagtgcacacccacatgaatcaaagtgtagtcctgatcaagaaaacatgccattagccgttgattc |
21101023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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