View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_56 (Length: 311)
Name: NF2687_high_56
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_56 |
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| [»] scaffold0180 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 294
Target Start/End: Original strand, 11975761 - 11976057
Alignment:
| Q |
3 |
ttaagtgattagaagctaagccctatattttttaatatgtcagcatattgattttcttctctgaacacgtgggatgcaatgaaattctttgacctagttt |
102 |
Q |
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| T |
11975761 |
ttaagtgattagaagctaagccctatattttctaatatgtcagcatattgattttcttctctg--cacgtgggatgcaatgaaattctttgacctagttt |
11975858 |
T |
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| Q |
103 |
tgttgatgcaattgttccatctgattcttagcttccagagaactacataattgtt-------cttggaagcatgtgccaccaaagcagaatctaactcaa |
195 |
Q |
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| T |
11975859 |
tgttgatgcaattgttccatctgtttcttagcttccagggaactacataattgttcttggaacttggaagcatgtgccaccaaagcagaatctaactcaa |
11975958 |
T |
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| Q |
196 |
gccaaaggttgtttcagttattttgatatgctagctcaatagcgctcattgacctctggatcttttttgatagattctctaatagtttttcttgatctt |
294 |
Q |
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| T |
11975959 |
gccaaaggttgtttcagttattttgatatgctagctcaatagccctcattgacctctagatcttttttgatagactctctaatagtttttattgatctt |
11976057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 24541123 - 24540994
Alignment:
| Q |
58 |
cttctctgaacacgtgggatgcaatgaaattctttgacctagttttgttgatgcaattgttccatctgattcttagcttccagagaactacataattgtt |
157 |
Q |
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| T |
24541123 |
cttctctaaacacatgtgaggcaatgaaggtcattgacttggttttgttgatgtagttgttccacctgtttcttagcttccaaggaacctcagaattgtt |
24541024 |
T |
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| Q |
158 |
cttggaagcatgtgccaccaaagcagaatc |
187 |
Q |
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| T |
24541023 |
tttgaaggcatttaccaccaaagcataatc |
24540994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 31112632 - 31112765
Alignment:
| Q |
49 |
attgattttcttctctgaacacgtgggatgcaatgaaattctttgacctagttttgttgatgcaattgttccatctgattcttagcttccagagaactac |
148 |
Q |
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| T |
31112632 |
attgattcccttcgctaaacacatgggatgctataaaattcattgacctagttttgataatgcaattgttccatctatttcttagcttccaaggaacaac |
31112731 |
T |
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| Q |
149 |
ataattgttcttggaagcatgtgccaccaaagca |
182 |
Q |
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| T |
31112732 |
ataattgtttttgaaagcttgtaccaccaaagca |
31112765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 42452313 - 42452435
Alignment:
| Q |
58 |
cttctctgaacacgtgggatgcaatgaaattctttgacctagttttgttgatgcaattgttccatctgattcttagcttccagagaactacataattgtt |
157 |
Q |
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||||||| ||||| |||||||| || |||||| |||||||||||||| | |||||||||||||||||| |||||| |||||| |||| ||||||||||| |
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| T |
42452313 |
cttctctaaacacatgggatgctataaaattcattgacctagttttgataatgcaattgttccatctgtttcttaacttccaaggaacaacataattgtt |
42452412 |
T |
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| Q |
158 |
cttggaagcatgtgccaccaaag |
180 |
Q |
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| T |
42452413 |
tttgaaagcttgtaccgccaaag |
42452435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 26751 - 26815
Alignment:
| Q |
75 |
gatgcaatgaaattctttgacctagttttgttgatgcaattgttccatctgattcttagcttcca |
139 |
Q |
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||||||||||||||| |||| ||||||||| | || |||||||||||||| |||||| |||||| |
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| T |
26751 |
gatgcaatgaaattcattgatctagttttggtaatacaattgttccatctctttcttaccttcca |
26815 |
T |
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