View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_60 (Length: 309)
Name: NF2687_high_60
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_60 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 46283478 - 46283200
Alignment:
| Q |
20 |
ctttcatcttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283478 |
ctttcatcttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaa |
46283379 |
T |
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| Q |
120 |
ctctgattcaactttggatctgtaatccttcacaagcacaacatgatcttcattctttctaccttcttccttctgttcaatcgaagaaacaattctccac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46283378 |
ctctgattcaactttggatctgtaatccttcacaagcacaacatgatcttcattctttctaccttcttccttctgttcaatcgaagaaacgattctccac |
46283279 |
T |
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| Q |
220 |
gcagcacgtagcgatccgatcacgttcttgtaagcgacggatatgaggttcctctcttcgacgctaagctctgatgatg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283278 |
gcagcacgtagcgatccgatcacgttcttgtaagcgacggatatgaggttcctctcttcgacgctaagctctgatgatg |
46283200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 3898806 - 3898979
Alignment:
| Q |
20 |
ctttcatcttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaa |
119 |
Q |
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||||||||| |||||||| |||| || | |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
3898806 |
ctttcatctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaa |
3898905 |
T |
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| Q |
120 |
ctctgattcaactttggatctgtaatccttcacaagcacaa---catgatcttcattctttctaccttcttcct |
190 |
Q |
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| T |
3898906 |
ctcggattcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattctttctaccttcttcct |
3898979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 5137 - 5310
Alignment:
| Q |
20 |
ctttcatcttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaa |
119 |
Q |
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||||||||| |||||||| |||| || | |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
5137 |
ctttcatctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaa |
5236 |
T |
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| Q |
120 |
ctctgattcaactttggatctgtaatccttcacaagcacaa---catgatcttcattctttctaccttcttcct |
190 |
Q |
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|||||||||||||||||| |||| | ||| ||| |||||| || |||||||||||||||||||||||||| |
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| T |
5237 |
ctctgattcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattctttctaccttcttcct |
5310 |
T |
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