View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_high_62 (Length: 298)
Name: NF2687_high_62
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_62 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 6914562 - 6914840
Alignment:
| Q |
1 |
ctgtcagaaacagtattgcaaaatatatcagtatatcacaaatacatgcactgttaagcctaaaaggctaaaacatagtatcttgtgc-ttactttacta |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6914562 |
ctgtcagaaacagtattgcaaaatatatcagtatatcacaaatacatgcactgttaagcctaaaaggctaaaacatagtatcttgtgcattactttacta |
6914661 |
T |
|
| Q |
100 |
tttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6914662 |
tttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaa |
6914761 |
T |
|
| Q |
200 |
ttgtcacggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6914762 |
ttgtcacggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca |
6914840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 115 - 278
Target Start/End: Original strand, 6242898 - 6243056
Alignment:
| Q |
115 |
actattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaaggga |
214 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||||||| ||||||||| ||||||||||||| ||||| | ||||| |||||||||||| ||||| |
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|
| T |
6242898 |
actaatgtttgacaactataaacagattggtgaatgtgctgcacctggctacaataacatct-----cagccgccaatcaggaaattgtcacgttaggga |
6242992 |
T |
|
| Q |
215 |
tgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca |
278 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
6242993 |
tgtgacaaattgtatgccaacgctctccttgctccttttggtacaactgcttaagtaatggaca |
6243056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 6235616 - 6235786
Alignment:
| Q |
108 |
aaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacg |
207 |
Q |
| |
|
|||||| |||| |||||||| | ||||||||||| |||||||||||||||| ||||||||||||| |||||||| | ||||| ||||||||||| |
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|
| T |
6235616 |
aaaatttactaatgtttgacaagtataaacagattgggaaatgtggtgcacctggctacaataacatctcatctcagctgccaatcaggaaattgtcaca |
6235715 |
T |
|
| Q |
208 |
gaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca |
278 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||| |||||||||| | ||||| ||||||||| |
|
|
| T |
6235716 |
taaggaatgtgagaaattgtatgccaacgctctccttgctccttttggtacaactgcttaattaatggaca |
6235786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 6166465 - 6166636
Alignment:
| Q |
108 |
aaaattcactattgtttgactaaaat-aaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcac |
206 |
Q |
| |
|
|||||| |||| |||||||| | ||| ||||||||| |||||||||||||||||| ||||||||||||| || ||||| | ||||| ||||||||||| |
|
|
| T |
6166465 |
aaaatttactaatgtttgacaacaattaaacagattggtgaatgtggtgcacctggctacaataacatctcatatcagctgccaatcaggaaattgtcac |
6166564 |
T |
|
| Q |
207 |
ggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca |
278 |
Q |
| |
|
||| ||||||| |||| |||||| ||| |||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6166565 |
atcaggaatgtgactaattgtatgcctacgttctccttgctccttttggtacaacttcttaagtaatggaca |
6166636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 278
Target Start/End: Original strand, 6263275 - 6263421
Alignment:
| Q |
132 |
ataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgc |
231 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||||||||||||| |||||||| | ||||| ||||||||||| |||| |||||| ||||| ||||| |
|
|
| T |
6263275 |
ataaacagattggtgaatgttgtgcacctggctacaataacatctcatctcagctgccaatcaggaaattgtcacataaggaatgtgagaaattgtatgc |
6263374 |
T |
|
| Q |
232 |
caacgctctccttgctccatttggtacaatttcttaagtaatggaca |
278 |
Q |
| |
|
|||||||| ||||||||| |||||||||| | ||||| ||||||||| |
|
|
| T |
6263375 |
caacgctcgccttgctccgtttggtacaactgcttaattaatggaca |
6263421 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 6139855 - 6140025
Alignment:
| Q |
108 |
aaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacg |
207 |
Q |
| |
|
|||||| |||| |||||||| | ||||||||||| ||||||| ||||||||||| | |||||||||| ||||||||| ||||| |||||||| || |
|
|
| T |
6139855 |
aaaatttactaatgtttgacaactataaacagattggtgaatgttgtgcacctggaaaaaataacatctcatctcagccgtcaatcaggaaattgtgaca |
6139954 |
T |
|
| Q |
208 |
gaagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca |
278 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||||| ||||||||| |||||||||| | ||| | ||||||||| |
|
|
| T |
6139955 |
gaagggatatgagaaattgtatgccaacgctcgccttgctccttttggtacaactgcttgattaatggaca |
6140025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 278
Target Start/End: Original strand, 6256772 - 6256941
Alignment:
| Q |
109 |
aaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacgg |
208 |
Q |
| |
|
||||| |||| |||||||| | ||||||||||| ||||||| ||||||||| |||||||| ||||||||||||| | ||||| |||||| |||| |
|
|
| T |
6256772 |
aaatttactaatgtttgacaactataaacagattggtgaatgttgtgcacctgtctacaataaaatctgatctcagctgccaatcaggaaattatcacat |
6256871 |
T |
|
| Q |
209 |
aagggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggaca |
278 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||| ||||||||| | ||||| ||||||||| |
|
|
| T |
6256872 |
aagggatgtgagaaattgtatgccaatgctcgccttgctccttttggtacagctgcttaattaatggaca |
6256941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 6897664 - 6897807
Alignment:
| Q |
115 |
actattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaaggga |
214 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||||||||||||||||| || |||||||||| ||||||||| | ||||| ||||||||||| ||| | |
|
|
| T |
6897664 |
actaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctataataacatctcatctcagccgccaatcaggaaattgtcacatcaggaa |
6897763 |
T |
|
| Q |
215 |
tgtgacaaattctatgccaacgctctccttgctccatttggtac |
258 |
Q |
| |
|
|||||| |||| ||||||||| |||||||| |||| |||||||| |
|
|
| T |
6897764 |
tgtgactaattgtatgccaacactctccttcctccttttggtac |
6897807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 278
Target Start/End: Complemental strand, 13275840 - 13275694
Alignment:
| Q |
132 |
ataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgc |
231 |
Q |
| |
|
||||||||||| ||||| | ||||||||||| | |||||||||| ||||||||| ||||| |||||||| || |||||||| ||| ||||| ||||| |
|
|
| T |
13275840 |
ataaacagattggtgaatatcgtgcacctggaaaaaataacatctcatctcagccgtcaatcaggaaattgtgacagaagggatatgagaaattgtatgc |
13275741 |
T |
|
| Q |
232 |
caacgctctccttgctccatttggtacaatttcttaagtaatggaca |
278 |
Q |
| |
|
||||||| ||||||||| |||||||||| | ||||| ||||||||| |
|
|
| T |
13275740 |
caacgcttgccttgctccttttggtacaactgcttaattaatggaca |
13275694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 258
Target Start/End: Original strand, 6880070 - 6880235
Alignment:
| Q |
93 |
tttactatttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaat |
192 |
Q |
| |
|
|||||||||| || ||||| |||| |||||||| | ||||||||||| |||||||||||||||| ||||||||||||| ||||||||| | || |
|
|
| T |
6880070 |
tttactatttaagagaaaatatactaatgtttgacaagtataaacagattgggaaatgtggtgcacctggctacaataacatctcatctcagccgcctat |
6880169 |
T |
|
| Q |
193 |
caagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtac |
258 |
Q |
| |
|
|| ||||||||||| ||| ||||||| |||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
6880170 |
caggaaattgtcacatcaggaatgtgactaattgtatgccaacgctctccttcctccttttggtac |
6880235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 6851479 - 6851368
Alignment:
| Q |
147 |
aatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgc |
246 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| | ||||| ||||||||||| ||| ||||||| |||| |||||||| ||||| ||| | |
|
|
| T |
6851479 |
aatgtggtgcacctggctacaataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaattgtatgccaatgctctgcttcc |
6851380 |
T |
|
| Q |
247 |
tccatttggtac |
258 |
Q |
| |
|
||| |||||||| |
|
|
| T |
6851379 |
tccctttggtac |
6851368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 259
Target Start/End: Complemental strand, 6593852 - 6593662
Alignment:
| Q |
69 |
taaaacatagtatcttgtgc-ttactttactatttgagcaaaaattcactattgtttgactaaaataaacagattattgaatgtggtgcacctggataca |
167 |
Q |
| |
|
|||||||||||||||||||| ||| | || |||||| || |||||||| | | |||||| | ||||||| ||| |||||| ||||||||||| |||| |
|
|
| T |
6593852 |
taaaacatagtatcttgtgcattattgtatgatttga-cagaaattcacaaatctttgacaagtataaacaaattggtgaatgcggtgcacctggctaca |
6593754 |
T |
|
| Q |
168 |
ataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgctccatttggtaca |
259 |
Q |
| |
|
|||||| || ||| || || | ||||| |||||||| || ||| ||||||| |||| |||||||| |||| |||| |||||||||||||| |
|
|
| T |
6593753 |
ataacagctcatcccaaccgctaatcaggaaattgttacatcaggaatgtgactaattttatgccaatgctcgccttcctccatttggtaca |
6593662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 4391270 - 4391202
Alignment:
| Q |
211 |
gggatgtgacaaattctatgccaacgctctccttgctccatttggtacaatttcttaagtaatggacat |
279 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||| |||| |||||||| | |||||||||||||||| |
|
|
| T |
4391270 |
gggatgtgacaaattgtatgccagcactctccttcctccttttggtactgctccttaagtaatggacat |
4391202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 6782690 - 6782657
Alignment:
| Q |
210 |
agggatgtgacaaattctatgccaacgctctcct |
243 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
6782690 |
agggatgtgacaaattgtatgccaacgctctcct |
6782657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 6941607 - 6941640
Alignment:
| Q |
210 |
agggatgtgacaaattctatgccaacgctctcct |
243 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
6941607 |
agggatgtgacaaattgtatgccaacgctctcct |
6941640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 5278336 - 5278384
Alignment:
| Q |
210 |
agggatgtgacaaattctatgccaacgctctccttgctccatttggtac |
258 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||| |||| |||||||| |
|
|
| T |
5278336 |
agggatgtgacaaattgtattccaactctctccttcctccttttggtac |
5278384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 6944721 - 6944753
Alignment:
| Q |
211 |
gggatgtgacaaattctatgccaacgctctcct |
243 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
6944721 |
gggatgtgacaaattgtatgccaacgctctcct |
6944753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 13912 - 13802
Alignment:
| Q |
147 |
aatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcacggaagggatgtgacaaattctatgccaacgctctccttgc |
246 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| | ||||| ||||||||||| | ||| ||||| |||| |||||||| ||||||||| | |
|
|
| T |
13912 |
aatgtggtgcacctggctacaataacatctcatctcagccgccaatcaggaaattgtcacatca-ggaagtgactaattgtatgccaatgctctccttcc |
13814 |
T |
|
| Q |
247 |
tccatttggtac |
258 |
Q |
| |
|
||| |||||||| |
|
|
| T |
13813 |
tccctttggtac |
13802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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