View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_high_63 (Length: 296)

Name: NF2687_high_63
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_high_63
NF2687_high_63
[»] chr8 (3 HSPs)
chr8 (15-278)||(35686213-35686478)
chr8 (106-278)||(35681143-35681315)
chr8 (15-93)||(35680953-35681033)
[»] chr3 (6 HSPs)
chr3 (111-274)||(23669107-23669268)
chr3 (111-274)||(24041383-24041544)
chr3 (154-274)||(23684648-23684768)
chr3 (154-274)||(24056885-24057005)
chr3 (141-270)||(23673530-23673659)
chr3 (141-270)||(24045806-24045935)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 35686213 - 35686478
Alignment:
Q  15 agatcttcatcagattataaagtctgctcagtcactttctaatgatatttgcagatatttt--gtttcgggtactaattagtcttgttatgatatttcaa 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  35686213 agatcttcatcagattataaagtccgctcagtcactttctaatgatatttgcagatattttttgtttcgggtactaattagtcttgttatgatatttcaa 35686312  T
Q  113 atatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35686313 atatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttctt 35686412  T
Q  213 caccgagacctgaagactggtaatctgctcgttagtcgcaattgtgatttgtagatatgtgacttt 278  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35686413 caccgagacctgaagcctggtaatctgctcgtcagtcgcaattgtgatttgtagatatgtgacttt 35686478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 106 - 278
Target Start/End: Original strand, 35681143 - 35681315
Alignment:
Q  106 atttcaaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaa 205  Q
    |||| ||||||||||||| || || || ||||   | |||||||||||||| ||||||||| |||||||| |  ||||| || ||| | |||||||||||    
T  35681143 attttaaatatttgcttaattcacttaacctttgaagtgttactaatcatatactcttattctagctactacgtggtcttaattatattcactctgcaaa 35681242  T
Q  206 tgttcttcaccgagacctgaagactggtaatctgctcgttagtcgcaattgtgatttgtagatatgtgacttt 278  Q
      |||||||||||||  ||||| || |||||||||| || | | |||||||||||||| ||||||||||||||    
T  35681243 gattcttcaccgagatttgaagcctagtaatctgcttgtcaatagcaattgtgatttgaagatatgtgacttt 35681315  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 35680953 - 35681033
Alignment:
Q  15 agatcttcatcagattataaagtctgctcagtcactttctaatgatatttgcagatatt--ttgtttcgggtactaattag 93  Q
    |||||||||||| ||||| |||||| ||||| ||||||||||||||  ||||| |||||  ||||||| ||||||||||||    
T  35680953 agatcttcatcaaattatcaagtctactcagccactttctaatgatcattgcaaatatttcttgtttcaggtactaattag 35681033  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 274
Target Start/End: Complemental strand, 23669268 - 23669107
Alignment:
Q  111 aaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttc 210  Q
    ||||||||||||| || ||||||||||||  |||||||||||||||||||||||||| || |||| | |||||| || |||||||| ||||||||| |||    
T  23669268 aaatatttgcttatttaacatatccttgt--ttgttactaatcataaactcttatttcagttacttcaaggtcttaattatctccattctgcaaatattc 23669171  T
Q  211 ttcaccgagacctgaagactggtaatctgctcgttagtcgc-aattgtgatttgtagatatgtga 274  Q
    ||||||| ||||||||| |||  ||||||||||| |  ||| |||||||||||| ||||||||||    
T  23669170 ttcaccgggacctgaagcctgagaatctgctcgtca-acgcaaattgtgatttgaagatatgtga 23669107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 274
Target Start/End: Complemental strand, 24041544 - 24041383
Alignment:
Q  111 aaatatttgcttactttacatatccttgtgattgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttc 210  Q
    ||||||||||||| || ||||||||||||  |||||||||||||||||||||||||| || |||| | |||||| || |||||||| ||||||||| |||    
T  24041544 aaatatttgcttatttaacatatccttgt--ttgttactaatcataaactcttatttcagttacttcaaggtcttaattatctccattctgcaaatattc 24041447  T
Q  211 ttcaccgagacctgaagactggtaatctgctcgttagtcgc-aattgtgatttgtagatatgtga 274  Q
    ||||||| ||||||||| |||  ||||||||||| |  ||| |||||||||||| ||||||||||    
T  24041446 ttcaccgggacctgaagcctgagaatctgctcgtca-acgcaaattgtgatttgaagatatgtga 24041383  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 23684768 - 23684648
Alignment:
Q  154 ataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttcttcaccgagacctgaagactggtaatctgctcgttagtcgcaa 253  Q
    |||||||||| ||| || |||| | |||||| || ||||| || ||||||||| |||||||||| ||||||||| |||  ||||||||||| | |   ||    
T  23684768 ataaactcttgtttcagttacttcaaggtcttaattatcttcattctgcaaatattcttcaccgggacctgaagcctgagaatctgctcgtcaatgcaaa 23684669  T
Q  254 ttgtgatttgtagatatgtga 274  Q
    |||||||||| |||| |||||    
T  23684668 ttgtgatttgaagatgtgtga 23684648  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 24057005 - 24056885
Alignment:
Q  154 ataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttcttcaccgagacctgaagactggtaatctgctcgttagtcgcaa 253  Q
    |||||||||| ||| || |||| | |||||| || ||||| || ||||||||| |||||||||| ||||||||| |||  ||||||||||| | |   ||    
T  24057005 ataaactcttgtttcagttacttcaaggtcttaattatcttcattctgcaaatattcttcaccgggacctgaagcctgagaatctgctcgtcaatgcaaa 24056906  T
Q  254 ttgtgatttgtagatatgtga 274  Q
    |||||||||| |||| |||||    
T  24056905 ttgtgatttgaagatgtgtga 24056885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 23673659 - 23673530
Alignment:
Q  141 attgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttcttcaccgagacctgaagactggtaatctgc 240  Q
    |||||||||||||||||||||||||||  | |||| | |||||| || ||||| |  |||| |||| |||||||||| || || |||  ||  |||||||    
T  23673659 attgttactaatcataaactcttatttcggttacttcaaggtcttaattatcttcgttctgtaaatattcttcaccgggatctaaagcgtgagaatctgc 23673560  T
Q  241 tcgttagtcgcaattgtgatttgtagatat 270  Q
    |||| | |   |||||||||||| ||||||    
T  23673559 tcgtcaatgcaaattgtgatttgaagatat 23673530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 24045935 - 24045806
Alignment:
Q  141 attgttactaatcataaactcttattttagctactcctaggtctcaaatatctccactctgcaaatgttcttcaccgagacctgaagactggtaatctgc 240  Q
    |||||||||||||||||||||||||||  | |||| | |||||| || ||||| |  |||| |||| |||||||||| || || |||  ||  |||||||    
T  24045935 attgttactaatcataaactcttatttcggttacttcaaggtcttaattatcttcgttctgtaaatattcttcaccgggatctaaagcgtgagaatctgc 24045836  T
Q  241 tcgttagtcgcaattgtgatttgtagatat 270  Q
    |||| | |   |||||||||||| ||||||    
T  24045835 tcgtcaatgcaaattgtgatttgaagatat 24045806  T

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