View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_65 (Length: 293)
Name: NF2687_high_65
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_65 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 17723701 - 17723969
Alignment:
| Q |
7 |
gaaatgattgatgccaatgttccacaagatactaatttaaggaaaatgcaagtgaggcatcacaaaatgaatataaataattaagtcggactgaaatttt |
106 |
Q |
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|||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
17723701 |
gaaatgattgatactaatgttccacgagatactaatttaaggaaaatgtaagtgaggcatcacaaaatgaatataaataattaagtcgggctgaattttt |
17723800 |
T |
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| Q |
107 |
tgcaaagtattctaatgaaatctatacaatctttacaggaacactacaattaccattctgtgagaatttacaaaatcttcagttgttgagatatggtcag |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17723801 |
tgcaaagtattctaatgaaatctatacaatctttgcaggaacactacaattaccattctgtgagaatttacaaaatattcagttgttgagatatggtcag |
17723900 |
T |
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| Q |
207 |
ctacatcgtcatcgcttttcgtcagcatcatctaaatgcatcagaaggacagaacaaactgcactttcc |
275 |
Q |
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| T |
17723901 |
ctacatcatcatcgcttttcgtcagcatcatctaaatgaatcataaggacagaacaaactgcactttcc |
17723969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 19024930 - 19025198
Alignment:
| Q |
7 |
gaaatgattgatgccaatgttccacaagatactaatttaaggaaaatgcaagtgaggcatcacaaaatgaatataaataattaagtcggactgaaatttt |
106 |
Q |
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|||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
19024930 |
gaaatgattgatactaatgttccacgagatactaatttaaggaaaatgtaagtgaggcatcacaaaatgaatataaataattaagtcgggctgaattttt |
19025029 |
T |
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| Q |
107 |
tgcaaagtattctaatgaaatctatacaatctttacaggaacactacaattaccattctgtgagaatttacaaaatcttcagttgttgagatatggtcag |
206 |
Q |
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| T |
19025030 |
tgcaaagtattctaatgaaatctatacaatctttgcaggaacactacaattaccattctgtgagaatttacaaaatattcagttgttgagatatggtcag |
19025129 |
T |
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| Q |
207 |
ctacatcgtcatcgcttttcgtcagcatcatctaaatgcatcagaaggacagaacaaactgcactttcc |
275 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
19025130 |
ctacatcatcatcgcttttcgtcagcatcatctaaatgaatcataaggacagaacaaactgcactttcc |
19025198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 20591815 - 20591763
Alignment:
| Q |
37 |
actaatttaaggaaaatgcaagtgaggcatcacaaaatgaatataaataatta |
89 |
Q |
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|||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
20591815 |
actaatgtaaggaaaatgcaagtgagacatcaaaaaatgaatataaataatta |
20591763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 19357315 - 19357263
Alignment:
| Q |
37 |
actaatttaaggaaaatgcaagtgaggcatcacaaaatgaatataaataatta |
89 |
Q |
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|||||| |||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
19357315 |
actaatgtaaggaaaatgcaagtgacacatcaaaaaatgaatataaataatta |
19357263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 18113416 - 18113361
Alignment:
| Q |
7 |
gaaatgattgatgccaatgttccacaagatactaatttaaggaaaatgcaagtgag |
62 |
Q |
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|||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |
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| T |
18113416 |
gaaatgattgataataatgatccacaagacactaatttaaggaaaatgcaagtgag |
18113361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 19330587 - 19330535
Alignment:
| Q |
37 |
actaatttaaggaaaatgcaagtgaggcatcacaaaatgaatataaataatta |
89 |
Q |
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|||||| ||||||||||||||| || ||||| |||||||||||||||||||| |
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| T |
19330587 |
actaatgtaaggaaaatgcaagcgacacatcaaaaaatgaatataaataatta |
19330535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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