View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_75 (Length: 270)
Name: NF2687_high_75
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 21869840 - 21869592
Alignment:
| Q |
1 |
gccttaagatgtagtgtactattgatatggttgggagaactaagcaagtaggctgaactacatcatagcattcgataaaacaatgagtagaaagttaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21869840 |
gccttaagatgtagtgtactattgatatggttgggagaactaagcaagtaggctgaactacatcatagcattcgataaaacaatgagtagaaagttaatt |
21869741 |
T |
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| Q |
101 |
gcattgtcaaaatgcttagttatttgggtgggaatagtagcatggaaacttaaatggcattagagtaataaagatctttgaataagcgatatttgaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21869740 |
gcattgtcaaaatgcttagttatttgggtgggaatagtagcatggaaacttaaatggcattagagtaataaagatatttgaataagcgatatttgaaatt |
21869641 |
T |
|
| Q |
201 |
actaaaaacttaaacaagacagcagtgatgtgtgatatagggcagaaga |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21869640 |
actaaaaacttaaacaagacagcagtgatgtgtgatatagggcagaaga |
21869592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 21925701 - 21925453
Alignment:
| Q |
1 |
gccttaagatgtagtgtactattgatatggttgggagaactaagcaagtaggctgaactacatcatagcattcgataaaacaatgagtagaaagttaatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21925701 |
gccttaagatgtagtgtactattgatatggttgggagaactaagcaagtaggctgaactacatcatagcattcgataaaacaatgagtagaaagttaatt |
21925602 |
T |
|
| Q |
101 |
gcattgtcaaaatgcttagttatttgggtgggaatagtagcatggaaacttaaatggcattagagtaataaagatctttgaataagcgatatttgaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21925601 |
gcattgtcaaaatgcttagttatttgggtgggaatagtagcatggaaacttaaatggcattagagtaataaagatatttgaataagcgatatttgaaatt |
21925502 |
T |
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| Q |
201 |
actaaaaacttaaacaagacagcagtgatgtgtgatatagggcagaaga |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21925501 |
actaaaaacttaaacaagacagcagtgatgtgtgatatagggcagaaga |
21925453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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