View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_77 (Length: 265)
Name: NF2687_high_77
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_77 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 38726412 - 38726660
Alignment:
| Q |
17 |
cattttaccttgttcaatgttcatgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgt |
116 |
Q |
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| T |
38726412 |
cattttaccttgttcaatgttcatgccccaataaccaggattagagataccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgt |
38726511 |
T |
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| Q |
117 |
aacgcaactttattacgctcaaaactagaggacatatcagttgatacagtaatggaagatttattctgatctccaataattgtccatggatctattcttt |
216 |
Q |
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| T |
38726512 |
aacgcaactttattacgctcaaaactagaggacatatcagttgatacagtaatggaagatttattctgatctccaataattgtccatggatctattcttt |
38726611 |
T |
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| Q |
217 |
gtgaatcattaaggccacggaatcctgcttcgaaggctttatttttcac |
265 |
Q |
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| T |
38726612 |
gtgaatcattaaggccacggaatcctgcttcgaaacctttatttttcac |
38726660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 34208999 - 34208874
Alignment:
| Q |
38 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
137 |
Q |
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| T |
34208999 |
catgccccaaaattcaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctaaacgtaaagcaaccttattacgctca |
34208900 |
T |
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| Q |
138 |
aaactagaggacatatcagttgatac |
163 |
Q |
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| T |
34208899 |
aaacaagaggaacgatcagttgatac |
34208874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 34168789 - 34168623
Alignment:
| Q |
38 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
137 |
Q |
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| T |
34168789 |
catgccccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactca |
34168690 |
T |
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| Q |
138 |
aaactagaggacatatcagttgatacagtaatggaagatttattctgatctccaataattgtccatggat |
207 |
Q |
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| T |
34168689 |
aaacaagatgaacgatcagttgatacgataatcgatgatgaatt---atctccaataattatccatggat |
34168623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 34155129 - 34155282
Alignment:
| Q |
51 |
ccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctcaaaactagaggaca |
150 |
Q |
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| T |
34155129 |
ccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactcaaaacaagatgaac |
34155228 |
T |
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| Q |
151 |
tatcagttgatacagtaatggaagatttattctgatctccaataattgtccatggat |
207 |
Q |
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| T |
34155229 |
gatcagttgatacgataatcgatgatgaatt---atctccaataattatccatggat |
34155282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 29111 - 28986
Alignment:
| Q |
38 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
137 |
Q |
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| T |
29111 |
catgccccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctnaacgtaaagcaaccttattacnctca |
29012 |
T |
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| Q |
138 |
aaactagaggacatatcagttgatac |
163 |
Q |
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| T |
29011 |
aaacaagatgaacgatcagttgatac |
28986 |
T |
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