View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_8 (Length: 647)
Name: NF2687_high_8
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 619
Target Start/End: Complemental strand, 13013084 - 13012473
Alignment:
| Q |
19 |
cctagtaccagatatcattgcaatgcaatcatcaccggtgccgatgttcgcacttttaatagttatcccgtttgatttgcctatttttattccatctgtg |
118 |
Q |
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|||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13013084 |
cctagtaccagagaccattgcaatacaatcatcaccggtgccgatgctcgcacttttaatagttatcccgtttgatttgcctatttttattccatctgtg |
13012985 |
T |
|
| Q |
119 |
tttgggctatcacccggggcggaaattctgannnnnnngaaaatcatgttttcacaagcaaacaacttaaaatgtgctcctttgctattaaaagatctca |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13012984 |
tttgggctatcacccggggcggaaattctgatttttgtgaaaatcatgttttcacaagcaaacaacttaaaatgtgctcctttgctattaaaagatctca |
13012885 |
T |
|
| Q |
219 |
aatggtgaatggtaccatttgtgacaaaatcaaatgtcatggactgagaaaacaagaaacaccaatgcattaatatcatgctaaacaaaaataaataact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13012884 |
aatggtgaatggtaccatttgtgacaaaatcaaatgtcatggactgagaaaacaagaaacaccaatgcattaatatcatgctaaacaaaaataaataact |
13012785 |
T |
|
| Q |
319 |
agtataatnnnnnnnnttaatataatgcttaacaaagataaatcatatttgtcgggctacaatttgttccctcaatccatagaatattatgcttcaatta |
418 |
Q |
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|||||||| ||||||||||||| || | |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13012784 |
agtataataaaaaaaattaatataatgctaaagagagataaatcatattggtgtggctacaatttgttccctcaatccatagaata-tatgcttcaatta |
13012686 |
T |
|
| Q |
419 |
agaaaataactact-----aataactcttaaatatatttattcaaaacaaaaaataactcttgaatatatatacgctttaaatagaaattatatacannn |
513 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
13012685 |
agaaaataactactaataaaataactcttaaatatatttattcaaaacaaaaaaaaactcttgaatatatatacactataaatagaaattatatacattt |
13012586 |
T |
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| Q |
514 |
nnnngtcttcattgt-------tcactcnnnnnnnnggcagagtttacatattcatattcgataattaagaaaaactttcagttttttagttcattttct |
606 |
Q |
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||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13012585 |
ttttgtcttcattgtttacatattactcttttttttggcagagtttacatattcatattcgaatattaagaaaaactttcagttttttagttcattttct |
13012486 |
T |
|
| Q |
607 |
aatataaattatg |
619 |
Q |
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|| |||||||||| |
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| T |
13012485 |
aaaataaattatg |
13012473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 11532412 - 11532302
Alignment:
| Q |
19 |
cctagtaccagatatcattgcaatgcaatcatcaccggtgccgatgttcgcacttttaatagttatcccgtttgatttgcctatttttattccatctgtg |
118 |
Q |
| |
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||||||||| || | ||| |||||||||||||| ||||| || |||||| ||||| |||| |||| || ||||| | |||||||| || ||||||||| |
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| T |
11532412 |
cctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattccctttgacatccctattttaataccatctgtg |
11532313 |
T |
|
| Q |
119 |
tttgggctatc |
129 |
Q |
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|| |||||||| |
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| T |
11532312 |
ttggggctatc |
11532302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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