View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_80 (Length: 251)
Name: NF2687_high_80
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_80 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 35709142 - 35709378
Alignment:
| Q |
1 |
aatagaaatggagctgggataatgccttatgagtcattaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccatttaaa |
100 |
Q |
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| T |
35709142 |
aatagaaatggagctgggataatgccttatgagtctttaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccatttaaa |
35709241 |
T |
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| Q |
101 |
cctagtttggtatatatgaataatcaaatgtgatgtttatctttggttcttaatagcacaggagttcttttatatttatcaagaataaagatgcaaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35709242 |
cctagtttggtatatatgaataatcaaatgtgatgtttatctttggttcttaatagcacaggagttcttttatatttatcaagaataaagatgcaaatta |
35709341 |
T |
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| Q |
201 |
tatacatttatcttgtacctattgtttattctgacct |
237 |
Q |
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| T |
35709342 |
tatacatttatcttgtacctattgtttattctgacct |
35709378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 35725045 - 35725156
Alignment:
| Q |
1 |
aatagaaatggagctgggataatgccttatgagtcattaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccatttaaa |
100 |
Q |
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|||||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725045 |
aatagacatggagctggtattgtgccttatgagtccttaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccatttaaa |
35725144 |
T |
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| Q |
101 |
cctagtttggta |
112 |
Q |
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| T |
35725145 |
cctagtgtggta |
35725156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 35725682 - 35725585
Alignment:
| Q |
1 |
aatagaaatggagctgggataatgccttatgagtcattaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccattta |
98 |
Q |
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||||| ||||||||||||||| |||| |||||| | | || ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
35725682 |
aataggaatggagctgggatagtgccatatgagctaatgaaaccattttcaggacctggagtcactggaaaaggagttccatatagcatatctattta |
35725585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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