View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_83 (Length: 249)
Name: NF2687_high_83
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_83 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30173050 - 30173296
Alignment:
| Q |
1 |
atggaatatgcggacatccaaaaccgatctcaagcatatacagtatatattatgatccatcaaaaaggtcatagattggatnnnnnnnncaccatgtgac |
100 |
Q |
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| T |
30173050 |
atggaatatgcggacatccaaaaccgatctcaagcatatacagtatatattatgatccatcaaaaaggtcatagattggataaaaaaaacaccatgtgac |
30173149 |
T |
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| Q |
101 |
attaaataaaatactttattaattaactagtatagtattgagattaagacacac--------acatacatgtatgtgtatataaagagtgtgatagaggt |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30173150 |
attaaataaaatactttattaattaactagtatagtattgagattaagacacacacatacatacatacatgtatgtgtatataaagagtgtgatagaggt |
30173249 |
T |
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| Q |
193 |
tagagtaattcacattcatttctttatcaaaaagaattcacattcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30173250 |
tagagtaattcacattcatttctttatcaaaaagaatttacattcat |
30173296 |
T |
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