View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_87 (Length: 242)
Name: NF2687_high_87
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_87 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 19702606 - 19702382
Alignment:
| Q |
18 |
catatctcataacgaagttcattgattcaatgtgtgtttacagttcctattctgtgtaaaagaaaacacctgaggacaacaatcaatgagtaaaaatgga |
117 |
Q |
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| T |
19702606 |
catatctcataacgaagttcattgattcaatgtgtgtttacagttcctattctgtgtaaaagaaaacacctgaggacaacaatcaatgagtaaaaatgga |
19702507 |
T |
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| Q |
118 |
agtgaacaaagaacaaaatggtaaaaatgattagactacacttagaccaaaatgcaataattagctacctaaacttattaaaagattgtcaaacaattgc |
217 |
Q |
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| T |
19702506 |
agtgaacaaagaacaaaatggtaaaaatgattagactacacttagaccaaaatgcaataattagctacctaaacttattaaaagattgtcaaacaattgc |
19702407 |
T |
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| Q |
218 |
tttatataacataataatacaaaga |
242 |
Q |
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| T |
19702406 |
tttatataacataataatacaaaga |
19702382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 20014034 - 20014217
Alignment:
| Q |
50 |
tgtgtttacagttcctattctgtgtaaaagaaaacacctgaggacaacaatcaatgagtaaa--aatgga--agtgaacaaagaacaaaatggtaaaaat |
145 |
Q |
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||||| ||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| ||| | || |||| ||||||||||||||||||| |
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| T |
20014034 |
tgtgtatacagttcctattctatgtacaagaaaacagctgaggacgacaatcaatgagtaaataaatacagtagaaaacagagaacaaaatggtaaaaat |
20014133 |
T |
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| Q |
146 |
gattagactacacttagaccaaaatgcaataattagctacctaaacttattaaaagattgtcaaacaattgctttatataacat |
229 |
Q |
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| T |
20014134 |
gattagactgaacttggcccaaaatgcaataattagctattaaaacatccaaaaagattgtcaaacaattgtattatataacat |
20014217 |
T |
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