View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_high_90 (Length: 240)
Name: NF2687_high_90
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_high_90 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 35956795 - 35956582
Alignment:
| Q |
18 |
agcttcaaccatatctgaatttgggagaattggtgttttcatacatgctgcagcaacaacaacaccctcagagtccctaacaatcgccgacagtccccaa |
117 |
Q |
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||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
35956795 |
agcttcagccatatctgaatttggcagaattggtgttttccaacatgctgcagcaacaacaacaccctcagagtccctaacaaccgctgacagtccccaa |
35956696 |
T |
|
| Q |
118 |
gttccatccccattctgtccagctgcactggtgttgagtttataccagccgggtggagggaaagtccatcgcacatttgaggtaggtatgggacaacctt |
217 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
35956695 |
gttccatccccattctgtccagctgcatcggtgttgagtttataccagccaggtggagggaaagtccatcgcacatttgaagtaggtatgtgacaacctt |
35956596 |
T |
|
| Q |
218 |
gattttgcctttgc |
231 |
Q |
| |
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|||||||| ||||| |
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| T |
35956595 |
gattttgcatttgc |
35956582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 26886916 - 26887119
Alignment:
| Q |
18 |
agcttcaaccatatctgaatttgggagaattggtgttttcatacatgctgcagcaacaacaacaccctcagagtccctaacaatcgccgacagtccccaa |
117 |
Q |
| |
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||||||| |||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| |
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| T |
26886916 |
agcttcagccatatctgaatttggaagaatcgttgttttccaacatgctgcagcaacaacaacacccttagagtccctaacaattgctgacggtccccat |
26887015 |
T |
|
| Q |
118 |
gttccatccccattctgtccagctgcactggtgttgagtttataccagccgggtggagggaaagtccatcgcacatttgaggtaggtatgggacaacctt |
217 |
Q |
| |
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||||||||| ||||||||| ||||||| |||||||| ||||||||| || |||||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
26887016 |
gttccatcctcattctgtctagctgcatcggtgttgattttataccaaccaggtggagggaccgtccatcgtacatttgatgtaggtatgggacaacctt |
26887115 |
T |
|
| Q |
218 |
gatt |
221 |
Q |
| |
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|||| |
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| T |
26887116 |
gatt |
26887119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 9753370 - 9753159
Alignment:
| Q |
18 |
agcttcaaccatatctgaatttgggagaattggtgttttcatacatgctgcagcaacaacaacaccctcagagtccctaacaatcgccgacagtccccaa |
117 |
Q |
| |
|
||||||||||||||| ||||||| ||||| | ||||||| ||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9753370 |
agcttcaaccatatcagaatttgtcagaatcgatgttttccaacatgttgtggcaacaacaacaccctcaaagtccctaacaatcgccgacagtccccat |
9753271 |
T |
|
| Q |
118 |
gttccatccccattctgtccagctgcactggtgttgagtttataccagccgggtggagggaaagtccatcgcacatttg----aggtaggtatgggacaa |
213 |
Q |
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||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||| |
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| T |
9753270 |
gttccatcctccttctgtctagctgcattggtgttgagtttataccagccgggtggagggacagtccatcgcacatttgatgtacgtatgtatgggacaa |
9753171 |
T |
|
| Q |
214 |
ccttgattttgc |
225 |
Q |
| |
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|||||||||||| |
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|
| T |
9753170 |
ccttgattttgc |
9753159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 44077553 - 44077750
Alignment:
| Q |
18 |
agcttcaaccatatctgaatttgggagaattggtgttttcatacatgctgcagcaacaacaacaccctcagagtccctaacaatcgccgacagtccccaa |
117 |
Q |
| |
|
||||||| |||||||| |||| || ||||| ||||||| | ||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
44077553 |
agcttcagccatatctaaattcggtagaatcggtgtttcccaacatgctgcgacaacaacaacaccctcagagtctctaacaatcgtcgacagtccccat |
44077652 |
T |
|
| Q |
118 |
gttccatccccattctgtccagctgcactggtgttgagtttataccagccgggtggagggaaagtccatcgcacatttgaggtaggtatgggacaacc |
215 |
Q |
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|
||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||| ||||||||| ||||| ||||||||||| |
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|
| T |
44077653 |
gttccatcctcattctgtccagctgcatcggtgttgagttcataccagccgggtggaaggacagtccatcacacatttgaagtaggcatgggacaacc |
44077750 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 52326755 - 52326954
Alignment:
| Q |
19 |
gcttcaaccatatctgaatttgggagaattggtgttttcatacatgctgcagcaacaacaacaccctcagagtccctaacaatcgccgacagtccccaag |
118 |
Q |
| |
|
|||||| |||||| ||||||||| | ||||| ||||||| |||| ||| |||||||||||||||||||||||| |||||||||| |||||||||||| | |
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| T |
52326755 |
gcttcagccatatttgaatttggtaaaattgatgttttccaacatactgtagcaacaacaacaccctcagagtctctaacaatcgtcgacagtccccatg |
52326854 |
T |
|
| Q |
119 |
ttccatccccattctgtccagctgcactggtgttgagtttataccagccgggtggagggaaagtccatcgcacatttgaggtaggtatgggacaaccttg |
218 |
Q |
| |
|
|||||||| ||||||||| || |||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| | |||||||||| |
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|
| T |
52326855 |
ttccatcctcattctgtctagttgcattggtgttgagtttgtaccagccaggtggagggaaagttcatcgcacatttgaagtaggtacgagacaaccttg |
52326954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 32159249 - 32159461
Alignment:
| Q |
18 |
agcttcaaccatatctgaatttgggagaattggtgttttcatacatgctgcagcaacaacaacaccctcagagtccctaacaatcgccgacagtccccaa |
117 |
Q |
| |
|
||||||| |||||||||||||||| ||||| |||||| || ||||| ||| | ||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
32159249 |
agcttcagccatatctgaatttggcagaatcggtgttctccaacatgttgcgggaacaacaacaccctcagagtctctaacaatcgctgacagtccccat |
32159348 |
T |
|
| Q |
118 |
gttccatccccattctgtccagctgcactggtgttgagtttataccagccgggtggagggaaagtccatcgcacatttgaggtaggtatgggacaacctt |
217 |
Q |
| |
|
||||||||| |||| |||||| ||||| ||||||||||||||||||||| |||||||||| | |||||| ||||||||| ||||||||| | ||||||| |
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|
| T |
32159349 |
gttccatcctcattttgtccaactgcatcggtgttgagtttataccagcc-ggtggagggacaatccatcacacatttgaagtaggtatgaggcaacctt |
32159447 |
T |
|
| Q |
218 |
gattttgcctttgc |
231 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
32159448 |
gattttgcatttgc |
32159461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 17091421 - 17091529
Alignment:
| Q |
123 |
atccccattctgtccagctgcactggtgttgagtttataccagccgggtggagggaaagtccatcgcacatttgaggtaggtatgggacaaccttgattt |
222 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
17091421 |
atccccattctgtccagctgcatcagtgttgagtttatactagccgggtggaggcaaagttcatcgcacatttgaggtaggtatgggacaaccttgcttt |
17091520 |
T |
|
| Q |
223 |
tgcctttgc |
231 |
Q |
| |
|
||| ||||| |
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|
| T |
17091521 |
tgcatttgc |
17091529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 17091349 - 17091418
Alignment:
| Q |
18 |
agcttcaaccatatctgaatttgggagaattggtgttttcatacatgctgcagcaacaacaacaccctca |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
17091349 |
agcttcaaccatatctgaatttgggagaattggtattttccaacatgctgcagcaacaacaacaccctca |
17091418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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