View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_high_94 (Length: 239)

Name: NF2687_high_94
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_high_94
NF2687_high_94
[»] chr2 (3 HSPs)
chr2 (1-60)||(1344963-1345022)
chr2 (1-60)||(39266456-39266515)
chr2 (1-60)||(33911961-33912020)
[»] chr1 (1 HSPs)
chr1 (1-59)||(30951771-30951829)
[»] chr4 (1 HSPs)
chr4 (1-41)||(35781451-35781491)
[»] chr8 (1 HSPs)
chr8 (1-60)||(23585709-23585768)
[»] chr6 (1 HSPs)
chr6 (32-60)||(4889752-4889780)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1344963 - 1345022
Alignment:
Q  1 tccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattca 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1344963 tccttctatctttcagaatgttattgataatcattttgaaagttcaattttttaaattca 1345022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39266456 - 39266515
Alignment:
Q  1 tccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattca 60  Q
    |||||||||||||| | ||||| | |||||||||||||||| |||||||| |||||||||    
T  39266456 tccttctatctttcggtatgttgtcgataatcattttgaaaattcaatttgttaaattca 39266515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33912020 - 33911961
Alignment:
Q  1 tccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattca 60  Q
    |||||||||||||  | ||||| | |||||||||||||||| |||||||| |||||||||    
T  33912020 tccttctatcttttggtatgttgtggataatcattttgaaaattcaatttgttaaattca 33911961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30951771 - 30951829
Alignment:
Q  1 tccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattc 59  Q
    |||||||||||||||| ||||| | |||||||||||||||| |||||||| ||||||||    
T  30951771 tccttctatctttcagtatgttgtcgataatcattttgaaaattcaatttgttaaattc 30951829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35781491 - 35781451
Alignment:
Q  1 tccttctatctttcagaatgttattgataatcattttgaaa 41  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  35781491 tccttctatcttccagaatgttattgataatcattttgaaa 35781451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23585709 - 23585768
Alignment:
Q  1 tccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattca 60  Q
    |||||||||||||||| || || | |||||||||||||||| |||||||| |||||||||    
T  23585709 tccttctatctttcagtatattgtcgataatcattttgaaaattcaatttgttaaattca 23585768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 4889780 - 4889752
Alignment:
Q  32 cattttgaaagttcaatttcttaaattca 60  Q
    |||||||||||||||||||||||||||||    
T  4889780 cattttgaaagttcaatttcttaaattca 4889752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University