View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_10 (Length: 627)
Name: NF2687_low_10
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 611
Target Start/End: Original strand, 47565133 - 47565725
Alignment:
| Q |
17 |
cagctcctgcaaattttgcacctctaatatcttaggcttcgtaataggccacaaacccccacgttacaaaccaactctgccaagagtattcttgcactct |
116 |
Q |
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| T |
47565133 |
cagctcctgcaaattttgcacctctaatatcataggcttcgtaataggccacaaacccccacgttacaaaccaactctgccaagagtattcttgcactct |
47565232 |
T |
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| Q |
117 |
aagaaagagagaaaatataccaaattgagagaagaaaagagcgtgtgtgtgtaatttgtgttttattgattatgaattgagtagtttttatggtacgttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47565233 |
aagaaagagagaaaatataccaaattgagagaagaaaagagagtgt--gtgtaatttgtgttttattgattatgaattgagtagtttttatggtacgttt |
47565330 |
T |
|
| Q |
217 |
gcattagtattttacttgatctcttacttgaattacaagtaagcaaacaaattcacaacaaactagttagttactaactaactctacatctaactacttg |
316 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47565331 |
gcataagtattttacttgatctcttacttgaataacaagtaagcaaactaattcacaacaaactagttagttactaactaactctacttctaactacttg |
47565430 |
T |
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| Q |
317 |
gtagttgaattatacaacacatccaaccagaatatgccaacgagttttcgtagctttcaaactcaaacagataggttctatgatcttatgacaactcacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47565431 |
gtagttgaattatacaacacatccaaccagaatatgccaacgagttttcgtagctttcaaactcaaacagataggttctatgatcttatgacgactcacc |
47565530 |
T |
|
| Q |
417 |
aaatgtagaacccaaaagaaccgctatcaagttgtaagaacatgagagggcgacaccaatacaaacatgaagtttataaagcaattaggatacatgaaat |
516 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47565531 |
aaatgtagaacccaaaagaaccgctatcaagttgtaaaaacatgagagggcgacaccaatacaaacatgaagtttataaagcaattaggatacatgaaat |
47565630 |
T |
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| Q |
517 |
tcataggtgacaaaactagtcagcctgtcccgctttgctctacccccaccattaacttgtctaaaacagggcatgacagggcaagacgagatagg |
611 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47565631 |
tcataggtgacaaaactcgtcagcctgtcccgctttgctctacccccaccattaacttgtctaaaacagggcatggcagggcaagacgagatagg |
47565725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 36527056 - 36526961
Alignment:
| Q |
235 |
atctcttacttgaattacaagtaagcaaacaaattcacaacaaactagttagttactaactaactctacatctaactacttggtagttgaattata |
330 |
Q |
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||||||||||||||| |||||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
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| T |
36527056 |
atctcttacttgaataacaagtaagctaaccaactcataacaaactagttagttactaactaactctacctctaactactcgatagttgaattata |
36526961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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