View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_low_101 (Length: 235)
Name: NF2687_low_101
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_101 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 51924657 - 51924876
Alignment:
| Q |
1 |
acaatttttcagctatttttcactgtatatcgcatgaatcattcgaattgtgaatttcattgcctacaataattatccacaagcatctcaccttttcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
51924657 |
acaatttttcagctatttttcactgtatatcgcatgaatcattcgaattgtgaatttcattgcctacaataattatccacgagcatctcacctcttcaat |
51924756 |
T |
|
| Q |
101 |
tgacacttataataatctaaacgaaaattaaagaaataaattctttttgggagtaatcaaagtttgaaaaaccacttatatagaat-nnnnnnnttaaga |
199 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
51924757 |
tgatactt---ataatctaaacgaaaattaaagaaataaattctttttgggagtaatcaaagtttgacaaaccacttatatagaataaaaaaaattaaga |
51924853 |
T |
|
| Q |
200 |
aactcctttttgatacaataaat |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
51924854 |
aactcctttttgatacaataaat |
51924876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 37066199 - 37066242
Alignment:
| Q |
59 |
attgcctacaataattatccacaagcatctcaccttttcaattg |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37066199 |
attgccaacaataattatccacaagcatctcacctcttcaattg |
37066242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 41527385 - 41527475
Alignment:
| Q |
88 |
tcaccttttcaattgacacttataataatctaaacgaaaattaaagaaataaattctttttgggagtaatcaaagtttgaaaaaccacttatat |
181 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||| |||||| | | || ||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
41527385 |
tcacctcttcaattgacacatataa---tctaaacaaaaattgacgtaagaaattatttttgggagttattgaagtttgaaaaaccacttatat |
41527475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 41608694 - 41608737
Alignment:
| Q |
59 |
attgcctacaataattatccacaagcatctcaccttttcaattg |
102 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
41608694 |
attgccaaaaataattatccacaagcatctcacctcttcaattg |
41608737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 8981937 - 8981982
Alignment:
| Q |
141 |
ttctttttgggagtaatcaaagtttgaaaaaccacttatatagaat |
186 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
8981937 |
ttctttttgggatttatcaaagtttgaaaaaccgtttatatagaat |
8981982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University