View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_103 (Length: 232)
Name: NF2687_low_103
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 5942045 - 5942254
Alignment:
| Q |
3 |
agatacatttcaactcatagaattatcaacgttccaaataactcttcaacccctttgcatgtgactttcattataaatatacaaaacttaatgtcacttc |
102 |
Q |
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| T |
5942045 |
agatacatttcaactca--gaattatcaacgttccaaataactcttcaacccctttgcatgtgacttt----ataaatatacaaaacttaatgtcatttc |
5942138 |
T |
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| Q |
103 |
tacaatccatcaaaatctctaaaacctttaattttttccaaaaatctcaatatttgatatgggtttagtatttggaagatttagtgctgagacaccaaaa |
202 |
Q |
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| T |
5942139 |
tacaatccatcgaaatctcttaaaccttcaatttt-tccaaaaatctcaacatttgatatgggtttagtatttggaagatttagtgctgagacaccaaaa |
5942237 |
T |
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| Q |
203 |
tatgaaatactcaaaac |
219 |
Q |
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| T |
5942238 |
tatgaaatactcaaaac |
5942254 |
T |
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