View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_107 (Length: 225)

Name: NF2687_low_107
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_107
NF2687_low_107
[»] chr3 (4 HSPs)
chr3 (1-210)||(11006114-11006323)
chr3 (1-210)||(11015677-11015886)
chr3 (6-194)||(11024705-11024893)
chr3 (54-210)||(47452065-47452221)
[»] chr6 (1 HSPs)
chr6 (19-125)||(21015508-21015614)
[»] chr4 (9 HSPs)
chr4 (35-99)||(7771155-7771219)
chr4 (117-177)||(45366409-45366469)
chr4 (87-177)||(45372260-45372350)
chr4 (35-99)||(7789840-7789904)
chr4 (58-165)||(48902703-48902810)
chr4 (35-140)||(48891159-48891265)
chr4 (49-98)||(49041405-49041454)
chr4 (117-177)||(48870366-48870426)
chr4 (117-177)||(48886052-48886112)
[»] chr8 (1 HSPs)
chr8 (7-98)||(4032180-4032271)
[»] chr7 (1 HSPs)
chr7 (58-125)||(30124190-30124257)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11006323 - 11006114
Alignment:
Q  1 cactacaacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgcttct 100  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006323 cactagaacacacactaatagaattgtgttcatgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgcttct 11006224  T
Q  101 acttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctttacaca 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006223 acttcactgaactttaattttatacttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctttacaca 11006124  T
Q  201 tctacctatg 210  Q
    ||||||||||    
T  11006123 tctacctatg 11006114  T

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Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11015886 - 11015677
Alignment:
Q  1 cactacaacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgcttct 100  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  11015886 cactgcaacacacactaatagaattgtgttcatgtcaactctagctcttgaaactcgatccattgattttgaagcgtcgcttaacgatgattctgcttct 11015787  T
Q  101 acttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctttacaca 200  Q
    |||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||| | |||    
T  11015786 acttcactgaaccttaattttatgcctccagaatcttattctagtcttgaaattaaaagttcatgtagaggatttatagttttgacttgttcttcaaaca 11015687  T
Q  201 tctacctatg 210  Q
    ||||||||||    
T  11015686 tctacctatg 11015677  T

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Target: chr3; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 11024893 - 11024705
Alignment:
Q  6 caacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttc 105  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11024893 caacacacactaatagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttc 11024794  T
Q  106 actgaactttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctt 194  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||    
T  11024793 acttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttgacttgttctt 11024705  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 47452221 - 47452065
Alignment:
Q  54 ttcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaat 153  Q
    ||||||| |||||||| ||||| || ||||| ||||||  |||||||||||||| |||| |||||||| |||||||| ||||| | | ||||||||||||    
T  47452221 ttcgatcaatagatttagaagcgtcacttaatgatgatagtgcttctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaat 47452122  T
Q  154 taaaagttcatgtcgaggatttattgttttgacttattctttacacatctacctatg 210  Q
    |||| |||||||| |||| |||||  |||| | || ||||| | |||||||| ||||    
T  47452121 taaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatg 47452065  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 21015508 - 21015614
Alignment:
Q  19 tagaattgtgttcttgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaat 118  Q
    ||||||| ||||| |||||| |||||  ||||||| |||||  || ||||||||| |||| |||| |||| ||| | |||||||||| |||||| |||||    
T  21015508 tagaattttgttcatgtcaaatccagaccttgaaactcgattgatcgattttgaaacatcacttagcgattattatacttctacttcgctgaaccttaat 21015607  T
Q  119 tttatgc 125  Q
    |||||||    
T  21015608 tttatgc 21015614  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 7771155 - 7771219
Alignment:
Q  35 tcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgcttc 99  Q
    ||||||| | ||| |||||||||||| ||||||||||||||||  |||||||||||| |||||||    
T  7771155 tcaactcaatctcatgaaattcgatctatagattttgaagcatttcttaacgatgatcctgcttc 7771219  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 45366469 - 45366409
Alignment:
Q  117 attttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttat 177  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |||||||| |||| |||||    
T  45366469 attttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttat 45366409  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 45372350 - 45372260
Alignment:
Q  87 atgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttat 177  Q
    |||||||||||||| ||||||| ||| ||| |||| ||  |||| ||||| ||| | |||||||||||||| |||||||| |||| |||||    
T  45372350 atgattctgcttctgcttcactaaaccttagttttgtggatccccaatctcattttgatcttgaaattaaaggttcatgtagagggtttat 45372260  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 7789840 - 7789904
Alignment:
Q  35 tcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgcttc 99  Q
    ||||||| | ||| ||||||| |||| ||||||||||||||||  |||||||||||| |||||||    
T  7789840 tcaactcaatctcatgaaatttgatctatagattttgaagcatttcttaacgatgatcctgcttc 7789904  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 48902703 - 48902810
Alignment:
Q  58 atccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgcttcccgaatcttattctaatcttgaaattaaa 157  Q
    ||||||||||||||||||||| || ||||||| |  ||||| | |||||| |||| |||| ||||||||||  | |||||||| | ||||  |||||| |    
T  48902703 atccatagattttgaagcatccctcaacgatggtcgtgcttatgcttcacagaaccttaaatttatgcttcgtggatcttattttgatctaaaaattata 48902802  T
Q  158 agttcatg 165  Q
     |||||||    
T  48902803 ggttcatg 48902810  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 48891159 - 48891265
Alignment:
Q  35 tcaactccagctcttgaaattcgatccatagattttgaagc-atcgcttaacgatgattctgcttctacttcactgaactttaattttatgcttcccgaa 133  Q
    |||||| |||||| | |||||||||| |||||||| ||||  |||||||||||||  |  ||||||| ||||||||||| | |||||  ||| |||| ||    
T  48891159 tcaacttcagctcctaaaattcgatctatagatttagaagttatcgcttaacgattttagtgcttctgcttcactgaacatcaatttcttgcatccccaa 48891258  T
Q  134 tcttatt 140  Q
    |||||||    
T  48891259 tcttatt 48891265  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 49041454 - 49041405
Alignment:
Q  49 tgaaattcgatccatagattttgaagcatcgcttaacgatgattctgctt 98  Q
    ||||||||| || |||||||| ||||||||| || |||||||||||||||    
T  49041454 tgaaattcgttctatagatttagaagcatcgattcacgatgattctgctt 49041405  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 48870366 - 48870426
Alignment:
Q  117 attttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttat 177  Q
    ||||| ||||||| |||||||||| | || ||||||||||| |||||||| |||| |||||    
T  48870366 attttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttat 48870426  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 48886052 - 48886112
Alignment:
Q  117 attttatgcttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttat 177  Q
    ||||| ||||||| |||||||||| | || ||||||||||| |||||||| |||| |||||    
T  48886052 attttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttat 48886112  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 4032271 - 4032180
Alignment:
Q  7 aacacacactaatagaattgtgttcttgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgctt 98  Q
    |||||||| | ||||| ||||| || | |||||||||  |||| ||| |||||| |||||||| ||| |||| |||||| ||||||||||||    
T  4032271 aacacacattcatagacttgtgatcatatcaactccaaatcttaaaactcgatctatagatttcgaaacatcccttaaccatgattctgctt 4032180  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 30124257 - 30124190
Alignment:
Q  58 atccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaactttaattttatgc 125  Q
    ||||||||||||||| ||||| ||||| ||| ||||||||| | ||||||||| | || |||||||||    
T  30124257 atccatagattttgatgcatctcttaaggatcattctgcttatgcttcactgagccttgattttatgc 30124190  T

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