View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_108 (Length: 224)
Name: NF2687_low_108
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_108 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1760143 - 1759920
Alignment:
| Q |
1 |
accaggcatgacaccacaagatccattttcattttcattgtcaccaccaccatcaacaccaggcgnnnnnnnncctcctcctatggttccagaacttcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1760143 |
accaggcatgacaccacaagatccattttcattttcattgtcaccaccaccatcaacaccaggcgttttgtttcctcctcctatggttccagaacttcca |
1760044 |
T |
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| Q |
101 |
caacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgccaaacc |
200 |
Q |
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| T |
1760043 |
caacaacccccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgccaaacc |
1759944 |
T |
|
| Q |
201 |
caacaccagataattctcttcctc |
224 |
Q |
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|||||||| ||||||||||||||| |
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| T |
1759943 |
caacaccatataattctcttcctc |
1759920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 1759979 - 1759851
Alignment:
| Q |
96 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
195 |
Q |
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||||| || |||||||||||||| ||| |||||| ||||||||| ||||||| | | ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1759979 |
ttccaaaagaaccaccatctttctccatgccaaacccaacaccatataattctcttcctcctccagagattccacaagaaccaccatctttctccatgcc |
1759880 |
T |
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| Q |
196 |
aaacccaacaccagataattctcttcctc |
224 |
Q |
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| T |
1759879 |
aaacccaacacctgatagttctcttcctc |
1759851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 1759910 - 1759794
Alignment:
| Q |
96 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
195 |
Q |
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|||||||| |||||||||||||| ||| |||||| |||||||| |||| ||| | | ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
1759910 |
ttccacaagaaccaccatctttctccatgccaaacccaacacctgatagttctcttcctcctccagagattccacaagaaccaccaactttctccatgcc |
1759811 |
T |
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| Q |
196 |
aaacccaacaccagata |
212 |
Q |
| |
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||||||||||||||||| |
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| T |
1759810 |
aaacccaacaccagata |
1759794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 1759841 - 1759725
Alignment:
| Q |
96 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
195 |
Q |
| |
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|||||||| |||||||| ||||| ||| |||||| ||||||||||||| || | |||||| |||||||||||| ||||||||||| |||||| |||||| |
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| T |
1759841 |
ttccacaagaaccaccaactttctccatgccaaacccaacaccagatatttttctttctccaccagagattccacaagaaccaccaactttctacatgcc |
1759742 |
T |
|
| Q |
196 |
aaacccaacaccagata |
212 |
Q |
| |
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||||||||| ||||||| |
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| T |
1759741 |
aaacccaaccccagata |
1759725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 1759634 - 1759518
Alignment:
| Q |
96 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
195 |
Q |
| |
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|||||||| |||||||| || || ||||||||||||||||||| |||| || | ||||||||| ||||||||| | ||||||||| |||| ||||||| |
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| T |
1759634 |
ttccacaagaaccaccaactatcgccacgccaaatccaacacctgatatttttctttctcctcctgagattccacaggaaccaccaattttcgccatgcc |
1759535 |
T |
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| Q |
196 |
aaacccaacaccagata |
212 |
Q |
| |
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||| ||||||||||||| |
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| T |
1759534 |
aaatccaacaccagata |
1759518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 1759679 - 1759587
Alignment:
| Q |
120 |
ccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgccaaacccaacaccagata |
212 |
Q |
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| T |
1759679 |
ccacgccaaacccaacaccagatatttttctttctccaccagagattccacaagaaccaccaactatcgccacgccaaatccaacacctgata |
1759587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 1759772 - 1759656
Alignment:
| Q |
96 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
195 |
Q |
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|||||||| |||||||| ||||| || |||||| ||||| ||||||| || | |||||| |||||||||||| |||||||||| ||| ||| ||| |
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| T |
1759772 |
ttccacaagaaccaccaactttctacatgccaaacccaaccccagatatttttctttctccaccagagattccacaagaaccaccgatttttgccacgcc |
1759673 |
T |
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| Q |
196 |
aaacccaacaccagata |
212 |
Q |
| |
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||||||||||||||||| |
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| T |
1759672 |
aaacccaacaccagata |
1759656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 1759565 - 1759480
Alignment:
| Q |
96 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccacca |
181 |
Q |
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||||||| |||||||| |||| ||| |||||||||||||||||||| || | ||||||||| ||||||||| ||||||||||| |
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| T |
1759565 |
ttccacaggaaccaccaattttcgccatgccaaatccaacaccagatatttttctttctcctcctgagattccacaagaaccacca |
1759480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 1760172 - 1760137
Alignment:
| Q |
29 |
tcattttcattgtcaccaccaccatcaacaccaggc |
64 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
1760172 |
tcattttcattgtcaccaccaccatcaaaaccaggc |
1760137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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