View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_low_11 (Length: 623)
Name: NF2687_low_11
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 119 - 608
Target Start/End: Complemental strand, 36771498 - 36771004
Alignment:
| Q |
119 |
caaaactaaaactaattagtgtggataagttggaaagcataaattatagcaccatggtgtggttctcttcctagggcttgtgcatatatagctttgtta- |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
36771498 |
caaaactaaaactaattagtgtggacaagttggaaagcataaattatagcaccatggtgtggttctcttcctaaggc------atatatagctttgttaa |
36771405 |
T |
|
| Q |
218 |
-------------tacacaacataatttaatttaattaattttatattcttctatatnnnnnnngtactttgtagtttgtatacaatgcaatggatggat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36771404 |
gctcacgaagacatacacaacataatttaatttaattaattttatattcttctatataaaaaaagtactttgtagtttgtatacaatgcaatggatggat |
36771305 |
T |
|
| Q |
305 |
ttggagttgcctcgtcataaaattttagattatgggaatctgcatttcgtttttcaaattcttcactttataacaataaattataagaatgaaatggata |
404 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36771304 |
ttggagttgcctcgtcataaaatttgacattatgggaatctgcatttcgtttttcaagttcttcactttataacaataaattataagaatgaaatggata |
36771205 |
T |
|
| Q |
405 |
acaactcagctatcattcttgcttattaagcatatactataatacagtattctctattattattatattcacaaccataggaaaattttgtgctcacttg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36771204 |
acaactcagctatcattcttgcttattaagcatatactataatacagtattctctatta---ttatattcacaaccataggaaaattttgtgctcacttg |
36771108 |
T |
|
| Q |
505 |
atctttttaactaatcactgaccaatgaccatgtatttagtataataaacgtcattgtcaacaattgaattatttcactttttaggattccagcaaaccc |
604 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36771107 |
atcttattaactaatcactgaccaatgaccatgtatttagtataataaacatcattgtcaacaattgaattatttcactttttaggattccagcaaaccc |
36771008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 585
Target Start/End: Complemental strand, 36783619 - 36783564
Alignment:
| Q |
530 |
tgaccatgtatttagtataataaacgtcattgtcaacaattgaattatttcacttt |
585 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
36783619 |
tgaccatgtatttagcataataaacatcattgtcaacaattgaatcatttaacttt |
36783564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 36791980 - 36791939
Alignment:
| Q |
290 |
atgcaatggatggatttggagttgcctcgtcataaaatttta |
331 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
36791980 |
atgcaacggatggatttacagttgcctcgtcataaaatttta |
36791939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University