View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_112 (Length: 209)
Name: NF2687_low_112
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 1204007 - 1204185
Alignment:
| Q |
1 |
cgcctctacttcaaatcattttcattcgacgtgacattcatgtgccttataatgatcccaactactcttgtatctctttttgtgattctttgcatttgaa |
100 |
Q |
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| T |
1204007 |
cgcctctacttcaaagcattttcattcgacgtgacattcatgtgccttataatgatcccaactactcttgtatctctttttgtgattctttgcatttgaa |
1204106 |
T |
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| Q |
101 |
agaaataacttaccgtggctgtggtagaccgcaagacatttttaatacggtcctcatgccatgcttctcctaaattcat |
179 |
Q |
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| T |
1204107 |
agaaataacttaccgtggctctggtagaccgcaagacatttttaatacggtcctcatgccatgcttctcctaaattcat |
1204185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 1200838 - 1201010
Alignment:
| Q |
3 |
cctctacttcaaatcattttcattcgacgtgacattcatgtgccttataatgatcccaactactcttgtatctctttttgtgattctttgcatttgaaag |
102 |
Q |
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| T |
1200838 |
cctctacttcaaagcattttcattcaacgtgacatttgcatgccttatgagggtatcaacttctcttgtatttctttctgtgattctttgcgtttgaaag |
1200937 |
T |
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| Q |
103 |
aaataacttaccgtggctgtggtagaccgcaagacatttttaatacggtcctcatgccatgcttctcctaaatt |
176 |
Q |
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| T |
1200938 |
aaataacttaccttggttttggtagaacacgagaca-tattaatacggtcatcgtgccatacttctcctaaatt |
1201010 |
T |
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