View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2687_low_12 (Length: 598)
Name: NF2687_low_12
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 72 - 581
Target Start/End: Complemental strand, 27848609 - 27848109
Alignment:
| Q |
72 |
tccaccaggaacat---caccacctcctttgcccggtccaccaggaacatacccaccacctacatcgcctcctccaccaggaatat---caccacctcct |
165 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||||||||||||||| ||||| | ||||||||||||||| || ||||| ||||| |
|
|
| T |
27848609 |
tccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc---------gtctcctccaccaggaacatgtccaccaactcct |
27848519 |
T |
|
| Q |
166 |
tcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccaccacttccttcacacgggtaaccagggacacattcaccgcctccta |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27848518 |
tcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccaccacttccttcacacgggtaacctgggacacattcaccgcctccta |
27848419 |
T |
|
| Q |
266 |
ccccaggaacaaatccaccacctcctacacccgggtaaccaggaacaaatccaccacttcccgtacctggtccatcaggaccatatccaccgcctgcttc |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27848418 |
ccccaggaacaaatccaccacctcctacacccgggtaaccaggaacaaatccaccacttcccgtacctggtccatcaggaccatatccaccgcctgcttc |
27848319 |
T |
|
| Q |
366 |
gnnnnnnnnnnnnnnnnnnnnnngagaaacaccatatccatcacctccttcgcctggtccggcatatccatatcctccacctacatccccaacaatgagt |
465 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27848318 |
g------cctcctcctcctcctcgagaaacaccatatccatcacctccttcgcctggtccggcatatccatatcctccacctacatccccaacaatgagt |
27848225 |
T |
|
| Q |
466 |
tttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccatttgtaaaattgttgaaatcctacaca |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27848224 |
tttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactaagaactttcgaagttgccatttgtaaaattgttgaaatcctacaca |
27848125 |
T |
|
| Q |
566 |
actgaggtttaagaat |
581 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27848124 |
actgaggtttaagaat |
27848109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 27848769 - 27848589
Alignment:
| Q |
14 |
catcaccacttccttcaccaggtctaacaggaacatacccaacgcctcctttgcctcctccaccaggaacatcaccacctcctttgcccggtccaccagg |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27848769 |
catcaccacttccttcaccaggtccaacaggaacatacccaacgcctcctttccctccttcaccaggaacatcaccacctccttcgcccggtccaccagg |
27848670 |
T |
|
| Q |
114 |
aacatacccaccacctacatcgcctcctccaccaggaatatcaccacctccttcacccggtccaccaggaacatatccacc |
194 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27848669 |
aacatacccaccacctacatcacctcctccaccaggaatatcaccacctccttcacccggtccaccaggaacatgtccacc |
27848589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 27848785 - 27848658
Alignment:
| Q |
67 |
cctcctccaccaggaacatcaccacctcctttgcccggtccaccaggaacatacccaccacctacatcgcctcctccaccaggaatatcaccacctcctt |
166 |
Q |
| |
|
||||||||||| | ||||||||| ||||| || |||||| |||||||||||||| | ||| | | |||||| ||||||||| |||||||||||||| |
|
|
| T |
27848785 |
cctcctccacctccaccatcaccacttccttcaccaggtccaacaggaacatacccaacgcctcctttccctccttcaccaggaacatcaccacctcctt |
27848686 |
T |
|
| Q |
167 |
cacccggtccaccaggaacatatccacc |
194 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
27848685 |
cgcccggtccaccaggaacatacccacc |
27848658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 27858062 - 27857985
Alignment:
| Q |
462 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
539 |
Q |
| |
|
||||||||| | |||||||| |||||||| |||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
27858062 |
gagttttctagtagcagaacacatgcttaaacccaacaacacaaagagagaaatgcttagaactttcgaagttgccat |
27857985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 571
Target Start/End: Complemental strand, 27872105 - 27871996
Alignment:
| Q |
462 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccatttgtaaaattgttgaaatccta |
561 |
Q |
| |
|
||||||||| | |||||||| |||||||| ||||||| |||||||| | | || || |||||||||||||||||||| || || ||||| |||| || |
|
|
| T |
27872105 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagatagcaatgcttagaactttcgaagttgccatatgaaattttgtttgaatctta |
27872006 |
T |
|
| Q |
562 |
cacaactgag |
571 |
Q |
| |
|
|||||||||| |
|
|
| T |
27872005 |
cacaactgag |
27871996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 27884342 - 27884265
Alignment:
| Q |
462 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
539 |
Q |
| |
|
||||||||| | |||||||| |||||||| ||||||| |||||||||| | || || |||||||| ||||||||||| |
|
|
| T |
27884342 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
27884265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 27885622 - 27885545
Alignment:
| Q |
462 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
539 |
Q |
| |
|
||||||||| | |||||||| |||||||| ||||||| |||||||||| | || || |||||||| ||||||||||| |
|
|
| T |
27885622 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
27885545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 27967535 - 27967458
Alignment:
| Q |
462 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
539 |
Q |
| |
|
||||||||| | |||||||| |||||||| ||||||| |||||||||| | || || |||||||| ||||||||||| |
|
|
| T |
27967535 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
27967458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 27979598 - 27979521
Alignment:
| Q |
462 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
539 |
Q |
| |
|
||||||||| | |||||||| |||||||| ||||||| |||||||||| | || || |||||||| ||||||||||| |
|
|
| T |
27979598 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
27979521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 28024521 - 28024444
Alignment:
| Q |
462 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
539 |
Q |
| |
|
||||||||| | |||||||| |||||||| ||||||| |||||||||| | || || |||||||| ||||||||||| |
|
|
| T |
28024521 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
28024444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 28036867 - 28036790
Alignment:
| Q |
462 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
539 |
Q |
| |
|
||||||||| | |||||||| |||||||| ||||||| |||||||||| | || || |||||||| ||||||||||| |
|
|
| T |
28036867 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
28036790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 27848550 - 27848490
Alignment:
| Q |
68 |
ctcctccaccaggaacat---caccacctcctttgcccggtccaccaggaacatacccacc |
125 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||| |
|
|
| T |
27848550 |
ctcctccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc |
27848490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University