View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2687_low_14 (Length: 586)

Name: NF2687_low_14
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2687_low_14
NF2687_low_14
[»] chr4 (11 HSPs)
chr4 (305-567)||(44851777-44852041)
chr4 (12-251)||(44851486-44851725)
chr4 (316-525)||(44866113-44866325)
chr4 (305-525)||(44900691-44900912)
chr4 (91-248)||(44840078-44840235)
chr4 (90-251)||(44865896-44866057)
chr4 (86-251)||(44900473-44900638)
chr4 (315-525)||(44883986-44884199)
chr4 (86-251)||(44883757-44883922)
chr4 (322-467)||(44840312-44840457)
chr4 (25-69)||(44865782-44865826)
[»] chr3 (2 HSPs)
chr3 (119-234)||(12924838-12924953)
chr3 (357-405)||(12924677-12924725)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 305 - 567
Target Start/End: Original strand, 44851777 - 44852041
Alignment:
Q  305 aataaaaaataagattcaagttttcttattctgtacatgccaattcaaatttaggttgtttatatggatgaaccaagtactggattagaccctgcttcaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44851777 aataaaaaataagattcaagttttcttattctgtacatgccaattcaaatttaggttgtttatatggatgagccaagtactggattagaccctgcttcaa 44851876  T
Q  405 ggaaatgcctatggaatgttatcaagcttgcgaaacaggatcgtgcaattattctgaccagtaaccccacacactc--tcatggattttgtagcactaca 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44851877 ggaaatgcctatggaatgttatcaagcttgcgaaacaggatcgtgcaattattctgaccagtaaccccacacactctttcatggattttgtagcactaca 44851976  T
Q  503 tttgcttctaatttatgctttagcctgtgttatatttgattcataaatcttggttttatgctttt 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851977 tttgcttctaatttatgctttagcctgtgttatatttgattcataaatcttggttttatgctttt 44852041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 44851486 - 44851725
Alignment:
Q  12 atatatctcaacaaatttttattgcttatttttctgtgaagagtatggatctgtaaaatttgtttggtagtgataattgtaactatttagctaccattat 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  44851486 atatttctcaacaaatttttattgcttatttttctgtgaagagtatggatctataaaatttgtttggcagtgataattgtaactatttagctaccattat 44851585  T
Q  112 attgttacaggcagtagaagaatctttgaagagtttaaaccttttccatggaggggttgctgataaacaatgtggaaaatacagtggagggatgaagagg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851586 attgttacaggcagtagaagaatctttgaagagtttaaaccttttctatggaggggttgctgataaacaatgtggaaaatacagtggagggatgaagagg 44851685  T
Q  212 agacttagtgttgcaatttcattgattggggaccccaaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44851686 agacttagtgttgcaatttcattgattggggaccccaaag 44851725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 316 - 525
Target Start/End: Original strand, 44866113 - 44866325
Alignment:
Q  316 agattcaagttttcttattctgtacatgccaattcaaatttaggttgtttatatggatgaaccaagtactggattagaccctgcttcaaggaaatgccta 415  Q
    ||||||| |||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44866113 agattcatgttttcgtattttgtaaatgacaattcaaatttaggttgtttatatggatgaaccaagtactggattagaccctgcttcaaggaaatgccta 44866212  T
Q  416 tggaatgttatcaagcttgcgaaacaggatcgtgcaattattctgaccagtaaccccacacactc--tcatggattttgtagcactaca-tttgcttcta 512  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||  ||||||||||||| |||||| | |||| |||||    
T  44866213 tggaatgttatcaagcttgcgaaacaggatcgtgcaatcattctgaccagtaatctcacacactctttcatggattttgtcgcactatattttgtttcta 44866312  T
Q  513 atttatgctttag 525  Q
     ||||| ||||||    
T  44866313 gtttatactttag 44866325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 305 - 525
Target Start/End: Original strand, 44900691 - 44900912
Alignment:
Q  305 aataaaaaataagattcaagttttcttattctgtacatgccaattcaaatttaggttgtttatatggatgaaccaagtactggattagaccctgcttcaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  44900691 aataaaaaataagattcaagttttcttattctgtacatgccaattcaaatttaggttgtttatatggatgagccaagcacgggattagaccctgcttcaa 44900790  T
Q  405 ggaaatgcctatggaatgttatcaagcttgcgaaacaggatcgtgcaattattctgaccagtaaccccacacactctcatggattttgtagcactacatt 504  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||  | | ||  || ||||||||||| |||||||| |||    
T  44900791 ggaaatgcctatggaatgttatcaggcttgcgaaacaggatcgtgcaatcattctaaccagtattctctcattctttcatggattttatagcactatatt 44900890  T
Q  505 -tgcttctaatttatgctttag 525  Q
     || ||||  ||||||||||||    
T  44900891 ctgtttcttgtttatgctttag 44900912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 44840078 - 44840235
Alignment:
Q  91 taactatttagctaccattatattgttacaggcagtagaagaatctttgaagagtttaaaccttttccatggaggggttgctgataaacaatgtggaaaa 190  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||  |||||||    
T  44840078 taactatttagcatccattatattgttacaggcagtagaagaatctttgaagagtttgaacctttaccatggagggattgctgataaacaagctggaaaa 44840177  T
Q  191 tacagtggagggatgaagaggagacttagtgttgcaatttcattgattggggacccca 248  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44840178 tacagtggagggatgaagaggaggcttagtgttgcaatttcattgattggggacccca 44840235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 44865896 - 44866057
Alignment:
Q  90 gtaactatttagctaccattatattgttacaggcagtagaagaatctttgaagagtttaaaccttttccatggaggggttgctgataaacaatgtggaaa 189  Q
    ||||||||||||||  |||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||  ||||||    
T  44865896 gtaactatttagcttgcattctactgttacaggcagtagaagaatctttgaagaatttaaaccttttccatggaggggttgctgataaaaaagctggaaa 44865995  T
Q  190 atacagtggagggatgaagaggagacttagtgttgcaatttcattgattggggaccccaaag 251  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44865996 atacagtggagggatgaagaggaggcttagtgttgcaatttcattgattggggaccccaaag 44866057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 44900473 - 44900638
Alignment:
Q  86 aattgtaactatttagctaccattatattgttacaggcagtagaagaatctttgaagagtttaaaccttttccatggaggggttgctgataaacaatgtg 185  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||   |    
T  44900473 aattgtaactatttagcttccattttattgttgcaggcagtagaagaatctttgaagaatttaaaccttttccatggaggtgttgctgataagcaagcag 44900572  T
Q  186 gaaaatacagtggagggatgaagaggagacttagtgttgcaatttcattgattggggaccccaaag 251  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44900573 gaaaatacagtggagggatgaagaggaggcttagtgttgcaatttcattgattggggaccccaaag 44900638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 315 - 525
Target Start/End: Original strand, 44883986 - 44884199
Alignment:
Q  315 aagattcaagttttcttattctgtacatgccaattcaaatttaggttgtttatatggatgaaccaagtactggattagaccctgcttcaaggaaatgcct 414  Q
    ||||||||||||||  |||| |||| ||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||    
T  44883986 aagattcaagtttttgtattttgtaaatgacaattcaaatttaggttgtttatatggatgagccaagtaccggattagaccctgcttctaggaattgcct 44884085  T
Q  415 atggaatgttatcaagcttgcgaaacaggatcgtgcaattattctgaccagtaaccccacacactc--tcatggattttgtagcactaca-tttgcttct 511  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||| | ||| |||||  |||||||||||||||||||| | |||||||||    
T  44884086 atggaatgctatcaggcttgcgaaacaggatcgtgcaatcattctgaccagtaatcacactcactctttcatggattttgtagcactaaattttgcttct 44884185  T
Q  512 aatttatgctttag 525  Q
    | ||||| ||||||    
T  44884186 agtttatactttag 44884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 44883757 - 44883922
Alignment:
Q  86 aattgtaactatttagctaccattatattgttacaggcagtagaagaatctttgaagagtttaaaccttttccatggaggggttgctgataaacaatgtg 185  Q
    |||||||| | ||||||| | | | ||||||| ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||  ||    
T  44883757 aattgtaaatgtttagcttctaatttattgttgcaggcagtagaagaatctttgaaggttttaaaccttttctatggaggggttgctgataaacaagctg 44883856  T
Q  186 gaaaatacagtggagggatgaagaggagacttagtgttgcaatttcattgattggggaccccaaag 251  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  44883857 gaaaatacagtggagggatgaagaggaggcttagtgttgccatttcattgattggggaccccaaag 44883922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 322 - 467
Target Start/End: Original strand, 44840312 - 44840457
Alignment:
Q  322 aagttttcttattctgtacatgccaattcaaatttaggttgtttatatggatgaaccaagtactggattagaccctgcttcaaggaaatgcctatggaat 421  Q
    ||||||||||||| |||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||    
T  44840312 aagttttcttattttgtaaatgccaattcaaatttagattgtttatttggatgagccaagtactggattagaccctgcttcaaggaaatggctttggaat 44840411  T
Q  422 gttatcaagcttgcgaaacaggatcgtgcaattattctgaccagta 467  Q
    ||||||||| ||||||||| ||| |||||||| ||| |||| ||||    
T  44840412 gttatcaagattgcgaaactggaccgtgcaatcattttgactagta 44840457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 44865782 - 44865826
Alignment:
Q  25 aatttttattgcttatttttctgtgaagagtatggatctgtaaaa 69  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  44865782 aatttttattgcttattattctgtgaagagtacggatctgtaaaa 44865826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 12924953 - 12924838
Alignment:
Q  119 caggcagtagaagaatctttgaagagtttaaaccttttccatggaggggttgctgataaacaatgtggaaaatacagtggagggatgaagaggagactta 218  Q
    ||||| || |||||||||||||| ||| |||||||||| || |||||||||||||||||| |   ||||||||| |||||||| ||||||||||| ||||    
T  12924953 caggcggtggaagaatctttgaaaagtgtaaacctttttcacggaggggttgctgataaaaaggctggaaaatatagtggaggaatgaagaggaggctta 12924854  T
Q  219 gtgttgcaatttcatt 234  Q
    ||||||||||||||||    
T  12924853 gtgttgcaatttcatt 12924838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 12924725 - 12924677
Alignment:
Q  357 aggttgtttatatggatgaaccaagtactggattagaccctgcttcaag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12924725 aggttgtttatatggatgaaccaagtactggattagaccctgcgtcaag 12924677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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