View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_15 (Length: 585)
Name: NF2687_low_15
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Complemental strand, 49058555 - 49057982
Alignment:
| Q |
14 |
aaattgaaccaacttcctatgtcatcatcacatatgataagtactgctttaccaattaataacaatcac----------atccagttgaatctataacac |
103 |
Q |
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| T |
49058555 |
aaattgaaccaacttcctatgtcaccatcacatatgataagtactgctttaccaattaataacaatcacgttcaatcacatccagttgaatctataacac |
49058456 |
T |
|
| Q |
104 |
cacattatgttgactttgttcctcataacatgttccctcactctggactcaacttccataaccaaagagggatgtcttttcctggtaggaaccatatggt |
203 |
Q |
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| T |
49058455 |
cacattatgttgactttgttcctcataacatgttccctcactctggactcaacttccataaccaaagagggatgtcttttcctggtaggaaccatatggt |
49058356 |
T |
|
| Q |
204 |
taactcatttgatactaatagacacattagaagccgtagaaatgtaggcgcgacgaatttggctgacatgaaacggtatgagcttgatattgattgcata |
303 |
Q |
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| T |
49058355 |
taactcatttgatactaatagacacattagaagccgtagaaatgtaggcgcgacgaatttggctgacatgaaacggtatgagcttgatattgattgcata |
49058256 |
T |
|
| Q |
304 |
ataaggggtgaagataaccgaacaacacttatgattaagaacattcctaacaagtaagctgtattannnnnnnnnnnnnnnnnatatattctctaatgcn |
403 |
Q |
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| T |
49058255 |
ataaggggtgaagataaccgaacaacacttatgattaagaacattcctaacaagtaagctgtatta-ttttttatttttttttatatattctctaatgca |
49058157 |
T |
|
| Q |
404 |
nnnnnnttgtatattcatttggtatgttttggattatgatttaaataannnnnnnngtaaatctcatttctcttgactatgacttgttgcaggtatactt |
503 |
Q |
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| T |
49058156 |
aaaaaattgtatattcatttggtatgttttggattatgatttaaataattttttttgtaaatctcatttctcttgactatgacttgttgcaggtatactt |
49058057 |
T |
|
| Q |
504 |
ctgagatgttgttggctgcaattgatgaacaccatgaaagaacttatgactttgtgtatctaccaattcatttca |
578 |
Q |
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| T |
49058056 |
ctgagatgttgttggctgcaattgatgaacgccattaaagaacttatgactttgtgtatctaccaattgatttca |
49057982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 90 - 361
Target Start/End: Original strand, 6554101 - 6554372
Alignment:
| Q |
90 |
tgaatctataacaccacattatgttgactttgttcctcataacatgttccctcactctggactcaacttccataaccaaagagggatgtcttttcctggt |
189 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
6554101 |
tgaacctataacaccacattgtgttgactttgttcctcataacatgttccctcatttcggactcaacgtccataaccaaagaggcatggtgtttcctggt |
6554200 |
T |
|
| Q |
190 |
aggaaccatatggttaactcatttgatactaatagacacattagaagccgtagaaatgtaggcgcgacgaatttggctgacatgaaacggtatgagcttg |
289 |
Q |
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| T |
6554201 |
agaaaccatatgattaattcatttgatacatacaaacgcgttcgaagccgtagaaatgttggcgcatcaaacttggctgacatgaaacgatatgaacttg |
6554300 |
T |
|
| Q |
290 |
atattgattgcataataaggggtgaagataaccgaacaacacttatgattaagaacattcctaacaagtaag |
361 |
Q |
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| T |
6554301 |
atattgactgcattaaaaggggcgaagataaccgaacaacacttatgattaagaacattcctaacaagtaag |
6554372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 410 - 578
Target Start/End: Original strand, 6554411 - 6554583
Alignment:
| Q |
410 |
ttgtatattcatttggtatgttttggattatgatttaaataannnnnnnngtaaatctcatttctcttgactatgacttg------ttgcaggtatactt |
503 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| || || || ||||||||||| |
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| T |
6554411 |
ttgtatattcatttggtatgttttagattatgatttaaatcattttctta--acatctcatttctcttgactaagattttgatcatttacaggtatactt |
6554508 |
T |
|
| Q |
504 |
ctgagatgttgttggctgcaattgatgaacaccatgaaagaacttatgactttgtgtatctaccaattcatttca |
578 |
Q |
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| T |
6554509 |
ccaagatgctgttggctgcaatcgatgaacaccataaaggagcttatgattttgtgtatctaccaattgatttca |
6554583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 6553990 - 6554055
Alignment:
| Q |
16 |
attgaaccaacttcctatgtcatcatcacatatgataagtactgctttaccaattaataacaatca |
81 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||| |||| |
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| T |
6553990 |
attgaaccaacttcctatgtcaccatcacatatgataaccactgttttaccaacaaataaccatca |
6554055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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