View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_18 (Length: 556)
Name: NF2687_low_18
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 30 - 541
Target Start/End: Complemental strand, 29846510 - 29845983
Alignment:
| Q |
30 |
taaaatactgaaagtttaaaacaagattgcaaacgaatagccgagacaaaaatagaag---aagaaaaagtcatacattttccttgaggtaatcgttgaa |
126 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
29846510 |
taaaataccgaaagtttaaaacaagattgcaaacgaatagccgagacaaaaatagaaggaaaaaaaaaagtcatacattttccttgaggtaatcgttgaa |
29846411 |
T |
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| Q |
127 |
ggagctcagttcatttagtaatgcttgttctgttccgtcattgggatctttgctcttgagaaatccaataaatgtagaaaagatctttgacccactatag |
226 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29846410 |
ggagctcagttcatttagtaatgcttgttcagttccgtcattgggatctttgctcttgagaaatccaataaatgtagaaaagatctttgacccactat-g |
29846312 |
T |
|
| Q |
227 |
acaaaaacacatgcaaacattagata-tgttgcaaatttaatatcaccgtgtaaacattaaagnnnnnnnnggagtaaacagtcattttggtccctaaat |
325 |
Q |
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| T |
29846311 |
acaaaa--acatgcaaacattagatattgttgcaaatttaatatcgccatgtaaacattaaagaacaaaaaggagtaaacagtcattttggtctctaaat |
29846214 |
T |
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| Q |
326 |
gtgtgagatggtgtcattgtagttcctga------------atatatataaattacaaaaacatcagagtttgtctttcatttgtaatttcatgtcccat |
413 |
Q |
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| T |
29846213 |
gtgtgagatggtgtcattgtagttcctgaatatatatatatatatatatatattacaaaaacatcagagtttgtctttcgtttgtaatttcatgtcccat |
29846114 |
T |
|
| Q |
414 |
acttactgactaacgaaagacatatccaaggaccaaattgact-acggaagatatatgcaaagaacaaattgactaag--gaaaaatacattcaaggatg |
510 |
Q |
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| T |
29846113 |
acttattgactaacgaaagacatatccgaggactaaattgactaatggaagacatatacaaagaacaaattgactaagtaaaaaaatacattcaaggatg |
29846014 |
T |
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| Q |
511 |
cttttataattttgatatactcagggactat |
541 |
Q |
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| T |
29846013 |
cttttgtaattttgatatactcaggtactat |
29845983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 37507655 - 37507583
Alignment:
| Q |
306 |
agtcattttggtccctaaatgtgtgagatggtgtcattgtagttcctgaatatatataaattacaaaaacatc |
378 |
Q |
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| T |
37507655 |
agtcattttggtctctaaatgtgtgcaatagtgtcattgtagttcttaaattcatcaaaattacaaaaacatc |
37507583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 37047536 - 37047488
Alignment:
| Q |
300 |
gtaaacagtcattttggtccctaaatgtgtgagatggtgtcattgtagt |
348 |
Q |
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||||||| | |||||| ||||||||||||||||||| ||||||| |||| |
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| T |
37047536 |
gtaaacaattattttgttccctaaatgtgtgagatgttgtcattatagt |
37047488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 25444815 - 25444869
Alignment:
| Q |
302 |
aaacagtcattttggtccctaaatgtgtgagatggtgtcattgtagttcctgaat |
356 |
Q |
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|||||||||||||||||||| |||| |||||| | ||| |||||||| ||||||| |
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| T |
25444815 |
aaacagtcattttggtccctgaatgagtgagacgctgttattgtagtccctgaat |
25444869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 35235621 - 35235576
Alignment:
| Q |
303 |
aacagtcattttggtccctaaatgtgtgagatggtgtcattgtagt |
348 |
Q |
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| T |
35235621 |
aacaatcattttggtccctaaatgtgtgaggcgctgtcattgtagt |
35235576 |
T |
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