View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2687_low_19 (Length: 554)
Name: NF2687_low_19
Description: NF2687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2687_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 51823732 - 51823339
Alignment:
| Q |
18 |
caaaatgaccaaaactttgacaactatagcacctgactttcttccagtaaaatttatttattccacctttaccaatccaaaattcattcccctttgagat |
117 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51823732 |
caaaatgaccaaaactttgacaatta--gcacctgactttcttccagtaaaatttatttattccacctttaccaatccaaaattcattcccctttgagat |
51823635 |
T |
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| Q |
118 |
gatttcactataatctttatcttaggaatttgagctctttaccttttttgtattgtttttccactttgcaaaggttgtttttcagccttccatggtttcc |
217 |
Q |
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||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51823634 |
gatttcactataatctttatctttagtatttgagctctttcccttttttgtattgtttttccactttgcaaaggttgtttttcagccttccatggtttcc |
51823535 |
T |
|
| Q |
218 |
tcttcaattgcaccaactataaagtaaaagggagcaaaacataattgagaacttactaactaactttattgctttctatacttctttatatagtacaggt |
317 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51823534 |
tcttcaattgcaccatctgtaaagtaaaagggagcaaaacataattgagaactaactaactaactttattgctttctatacttctttatatagtacaggt |
51823435 |
T |
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| Q |
318 |
gatcaaaggcccaattacattttaggttaattaccagaatattgaattactctactaacattagagaatgaaatactttcataattgcaactgaac |
413 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51823434 |
gatcaaaggctcaagtacattttaggttaattaccagaatattgaattactctactaacattagagaatgaaatactttcataattgcaactgaac |
51823339 |
T |
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